RNA–Protein interactions for RNA: ENST00000537004.5

CLIP1-208, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,000 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-208ENST00000537004 IMPG1Q17R60 797 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 SMU1Q2TAY7 513 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 TIGD2Q4W5G0 525 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 ZFAND4Q86XD8 727 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 WDR36Q8NI36 951 aaKnown RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 LRRC58Q96CX6 371 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 MTFMTQ96DP5 389 aaKnown RBP11.46□□□□□ -0.57
CLIP1-208ENST00000537004 PCDHAC1Q9H158 963 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 ACTL8Q9H568 366 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 ABCD2Q9UBJ2 740 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 PSMD13Q9UNM6 376 aa11.46□□□□□ -0.57
CLIP1-208ENST00000537004 CCDC187A0A096LP49 1063 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 IGHV5-10-1A0A0J9YXX1 117 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 NME4O00746 187 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 PLD2O14939 933 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ANKRD28O15084 1053 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 PDYNP01213 254 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ACADSP16219 412 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SLC6A2P23975 617 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CCKBRP32239 447 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ETV5P41161 510 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 MAPK9P45984 424 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 BDKRB1P46663 353 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 FOXM1Q08050 763 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 TRAP1Q12931 704 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 NFYCQ13952 458 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 TLR1Q15399 786 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 COL28A1Q2UY09 1125 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CMPK2Q5EBM0 449 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ZFP1Q6P2D0 407 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SPATA24Q86W54 205 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 EGFL6Q8IUX8 553 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 KBTBD2Q8IY47 623 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 L3MBTL4Q8NA19 623 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ATL1Q8WXF7 558 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 LIN37Q96GY3 246 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CCDC138Q96M89 665 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 FOPNLQ96NB1 174 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 TMEM74Q96NL1 305 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 TIMM29Q9BSF4 260 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 LRTM1Q9HBL6 345 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 PISDQ9UG56 409 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 LEF1Q9UJU2 399 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SNX6Q9UNH7 406 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 EIF3LQ9Y262 564 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 LOXL2Q9Y4K0 774 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 PCDHGA8Q9Y5G5 932 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CFAP20Q9Y6A4 193 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 A0A087WV48 116 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 KIR2DS5A0A0G2JLQ3 304 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 A0A0G2JNG1 304 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 DYTNA2CJ06 578 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 KIR2DS3K7RE56 304 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 LIN7AO14910 233 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SEC22BO75396 215 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 DXOO77932 396 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CCL4P13236 92 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 JAK1P23458 1154 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 RBMS1P29558 406 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CLCNKAP51800 687 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 UBE2IP63279 158 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 KIR2DS5Q14953 304 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CCSMST1Q4G0I0 132 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 PAGE3Q5JUK9 113 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SNAP47Q5SQN1 464 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 C6orf10Q5SRN2 563 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 AGTRAPQ6RW13 159 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SLC9B2Q86UD5 537 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 AMZ2Q86W34 360 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SLC15A3Q8IY34 581 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CFAP206Q8IYR0 622 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SPDYE1Q8NFV5 336 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 SNIP1Q8TAD8 396 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 NCSTNQ92542 709 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 AHCYL2Q96HN2 611 aaKnown RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ZNF514Q96K75 400 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CCDC74BQ96LY2 380 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ZNF184Q99676 751 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ACPTQ9BZG2 426 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 ELOVL6Q9H5J4 265 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 C1orf109Q9NX04 203 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 STOX2Q9P2F5 926 aaPredicted RBP11.45□□□□□ -0.58
CLIP1-208ENST00000537004 CIDEBQ9UHD4 219 aa11.45□□□□□ -0.58
CLIP1-208ENST00000537004 HEATR5BQ9P2D3 2071 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 A8MU76 341 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 PRAMEF4O60810 478 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 SLC16A8O95907 504 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 TYRP1P17643 537 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 IDSP22304 550 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 HALP42357 657 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 CASP2P42575 452 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 NEK2P51955 445 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 CHIT1Q13231 466 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 PTGR1Q14914 329 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 CACHD1Q5VU97 1274 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 PRAMEF9Q5VWM5 478 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 XKR5Q6UX68 686 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 IZUMO2Q6UXV1 221 aa11.44□□□□□ -0.58
CLIP1-208ENST00000537004 THOC6Q86W42 341 aaKnown RBP11.44□□□□□ -0.58
CLIP1-208ENST00000537004 SELENOMQ8WWX9 145 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms