RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 TBC1D20Q96BZ9 403 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 RIPOR3Q96MK2 946 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 OR14A2Q96R54 314 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 FCRL5Q96RD9 977 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 OMDQ99983 421 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 SLC39A3Q9BRY0 314 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 TRAF4Q9BUZ4 470 aaPredicted RBP6.37□□□□□ -1.39
USP28-202ENST00000535607 REXO4Q9GZR2 422 aaKnown RBP6.37□□□□□ -1.39
USP28-202ENST00000535607 SLIRPQ9GZT3 109 aaKnown RBP6.37□□□□□ -1.39
USP28-202ENST00000535607 C6orf62Q9GZU0 229 aaPredicted RBP6.37□□□□□ -1.39
USP28-202ENST00000535607 RACGAP1Q9H0H5 632 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 TMEM245Q9H330 911 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 GSTO2Q9H4Y5 243 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 DUSP21Q9H596 190 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 PTPRHQ9HD43 1115 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 MID1IP1Q9NPA3 183 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 STARD7Q9NQZ5 370 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 AIG1Q9NVV5 245 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 FKBP14Q9NWM8 211 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 PIH1D1Q9NWS0 290 aaKnown RBP6.37□□□□□ -1.39
USP28-202ENST00000535607 OBP2AQ9NY56 170 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 KLQ9UEF7 1012 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 TRPS1Q9UHF7 1281 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 SIX4Q9UIU6 781 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 CFL2Q9Y281 166 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 TRAPPC4Q9Y296 219 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 PCDHGB2Q9Y5G2 931 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 LYVE1Q9Y5Y7 322 aa6.37□□□□□ -1.39
USP28-202ENST00000535607 FNDC1Q4ZHG4 1894 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 LOC100996750A0A140TA64 210 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 FAM92AA1XBS5 289 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CCDC182A6NF36 153 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 METTL15A6NJ78 407 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 F5H423 210 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 M0QZ92 97 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 FXYD1O00168 92 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 KCNK1O00180 336 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 TOR1BO14657 336 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PIP5K1BO14986 540 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SLC7A4O43246 635 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 NOS1APO75052 506 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 TMCC2O75069 709 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 MTRF1O75570 445 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 RETP07949 1114 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ABCB1P08183 1280 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 CXCL8P10145 99 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 UROSP10746 265 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 MTHFD1P11586 935 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 IL7P13232 177 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 IL7RP16871 459 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SYN1P17600 705 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ERCC2P18074 760 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CHRM3P20309 590 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CAPN3P20807 821 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PRKACBP22694 351 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 NR4A1P22736 598 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 IGFBP5P24593 272 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CCNCP24863 283 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 YWHAQP27348 245 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ETV6P41212 452 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CASP2P42575 452 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SLC1A2P43004 574 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 NR4A2P43354 598 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SLC15A1P46059 708 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 GNPDA1P46926 289 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CLCN3P51790 818 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 AP2S1P53680 142 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 MLLT10P55197 1068 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 P2RX3P56373 397 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 OSTNP61366 133 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 VBP1P61758 197 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SCN1BQ07699 218 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CD300CQ08708 224 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CD47Q08722 323 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 GRM7Q14831 915 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 PPP1R3AQ16821 1122 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SMU1Q2TAY7 513 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 DCAF4L1Q3SXM0 396 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 FUT11Q495W5 492 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ATP6AP1LQ52LC2 224 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ATAD3CQ5T2N8 411 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 UBE2UQ5VVX9 321 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ANKS6Q68DC2 871 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 TIGD3Q6B0B8 471 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 TWF2Q6IBS0 349 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 CAPN13Q6MZZ7 669 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 SHQ1Q6PI26 577 aaKnown RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 FAM111BQ6SJ93 734 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ADAMTSL2Q86TH1 951 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CIR1Q86X95 450 aaPredicted RBP6.36□□□□□ -1.39
USP28-202ENST00000535607 FAM131BQ86XD5 332 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 P3H2Q8IVL5 708 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CEP97Q8IW35 865 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 KLHDC8BQ8IXV7 354 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 SYTL1Q8IYJ3 562 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ELMOD2Q8IZ81 293 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 CLIP4Q8N3C7 705 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 LRRC71Q8N4P6 559 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 ZNF540Q8NDQ6 660 aa6.36□□□□□ -1.39
USP28-202ENST00000535607 OR2T12Q8NG77 320 aa6.36□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms