RNA–Protein interactions for RNA: ENST00000533079.5

CAPN1-223, Transcript of calpain 1, human

TSL 3

Gene CAPN1, Length 878 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CAPN1-223	ENST00000533079	FAM53C	Q9NYF3	392 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	HCN3	Q9P1Z3	774 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	SPG11	Q96JI7	2443 aa		11.66	□□□□□ -0.54
CAPN1-223	ENST00000533079	ARHGEF33	A8MVX0	844 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	CD3EAP	O15446	510 aa	Known RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	RAD51C	O43502	376 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	CDC40	O60508	579 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	JAK1	P23458	1154 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ITGA8	P53708	1063 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	MEF2A	Q02078	507 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	LTB	Q06643	244 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	KLF1	Q13351	362 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	CCNG2	Q16589	344 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	RNF187	Q5TA31	235 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF468	Q5VIY5	522 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	NIPAL1	Q6NVV3	410 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	EMB	Q6PCB8	327 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	DRICH1	Q6PGQ1	229 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	PPP1R21	Q6ZMI0	780 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	SYDE1	Q6ZW31	735 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF227	Q86WZ6	799 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	FBXO15	Q8NCQ5	510 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	PPHLN1	Q8NEY8	458 aa	Known RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF778	Q96MU6	729 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	FRMD8P1	Q9BZ68	369 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	CLEC4M	Q9H2X3	399 aa	Predicted RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ANKH	Q9HCJ1	492 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF358	Q9NW07	568 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	ZNF446	Q9NWS9	450 aa		11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	R3HDM2	Q9Y2K5	976 aa	Known RBP	11.65	□□□□□ -0.54
CAPN1-223	ENST00000533079	PRRC2A	P48634	2157 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SCN2A	Q99250	2005 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	OR14I1	A6ND48	311 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	FIGNL2	A6NMB9	653 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	FAM47E-STBD1	D6RA91	191 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079		E7ENX8	843 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SMAP	O00193	183 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	PFDN6	O15212	129 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	HS6ST1	O60243	411 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	NDUFS3	O75489	264 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SLC16A8	O95907	504 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	IL1RN	P18510	177 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	GDF10	P55107	478 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	ADAR	P55265	1226 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	NUP107	P57740	925 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	OR4D2	P58180	307 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	MLF1	P58340	268 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SKP1	P63208	163 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	ADAM8	P78325	824 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	TAP2	Q03519	686 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	PMPCA	Q10713	525 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	TSTA3	Q13630	321 aa	Predicted RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SLC25A35	Q3KQZ1	300 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	PRSS41	Q7RTY9	318 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	HDX	Q7Z353	690 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	VN1R4	Q7Z5H5	301 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	SULF2	Q8IWU5	870 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	CAMKV	Q8NCB2	501 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	OR5M3	Q8NGP4	307 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	CREB3L4	Q8TEY5	395 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	AEN	Q8WTP8	325 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	MAGOHB	Q96A72	148 aa	Known RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	FUT8	Q9BYC5	575 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	RAB17	Q9H0T7	212 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	VIPAS39	Q9H9C1	493 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	LANCL2	Q9NS86	450 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	MARCH4	Q9P2E8	410 aa	Predicted RBP	11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	HRH3	Q9Y5N1	445 aa		11.64	□□□□□ -0.55
CAPN1-223	ENST00000533079	FAM171A2	A8MVW0	826 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	SGK494	L7N484	410 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	ACOT7	O00154	380 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	BCKDK	O14874	412 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	PROM1	O43490	865 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	PEX1	O43933	1283 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	ESR1	P03372	595 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	SLC35G6	P0C7Q6	338 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	FDFT1	P37268	417 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	COIL	P38432	576 aa	Predicted RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	ZFP36L2	P47974	494 aa	Known RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	EIF3B	P55884	814 aa	Known RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	EMC4	Q5J8M3	183 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	CTSL3P	Q5NE16	218 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	PAMR1	Q6UXH9	720 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	RGS9BP	Q6ZS82	235 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	LDB1	Q86U70	411 aa	Predicted RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	CCDC71	Q8IV32	467 aa	Predicted RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	KLHL7	Q8IXQ5	586 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	RPRML	Q8N4K4	120 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	GOT1L1	Q8NHS2	421 aa	Predicted RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	ZNF480	Q8WV37	535 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	CAVIN3	Q969G5	261 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	C18orf12	Q96KH6	178 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	PKNOX2	Q96KN3	472 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	PKP4	Q99569	1192 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	ERP44	Q9BS26	406 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	DDX47	Q9H0S4	455 aa	Known RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	RASSF1	Q9NS23	344 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	TMEM184C	Q9NVA4	438 aa		11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	UTP11	Q9Y3A2	253 aa	Known RBP	11.63	□□□□□ -0.55
CAPN1-223	ENST00000533079	SLC22A7	Q9Y694	548 aa		11.63	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms