RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 TMC8Q8IU68 726 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 REM2Q8IYK8 340 aaPredicted RBP18.52■□□□□ 0.56
VPS28-213ENST00000530983 OR4A15Q8NGL6 344 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 ZNF558Q96NG5 402 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 CEP44Q9C0F1 390 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 ANKHQ9HCJ1 492 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 FKBP14Q9NWM8 211 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 SH3BP4Q9P0V3 963 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 SCHIP1Q9P0W5 487 aaPredicted RBP18.52■□□□□ 0.56
VPS28-213ENST00000530983 SLC25A13Q9UJS0 675 aa18.52■□□□□ 0.56
VPS28-213ENST00000530983 MGAT4DA6NG13 374 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 ADAMDEC1O15204 470 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 GRM6O15303 877 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 TSPAN6O43657 245 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 GNRH1P01148 92 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 EIF2S1P05198 315 aaKnown RBP18.51■□□□□ 0.55
VPS28-213ENST00000530983 GADD45AP24522 165 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 IMPA1P29218 277 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 POLR2LP62875 67 aaKnown RBP18.51■□□□□ 0.55
VPS28-213ENST00000530983 PCDH1Q08174 1060 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 SLC22A16Q86VW1 577 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 ATL1Q8WXF7 558 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 GGHQ92820 318 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 SAMD11Q96NU1 681 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 ZNF282Q9UDV7 671 aaPredicted RBP18.51■□□□□ 0.55
VPS28-213ENST00000530983 DOCK6Q96HP0 2047 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 GNG14A0A1W2PPG7 69 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 A0A1W2PRU2 124 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 CLCA1A8K7I4 914 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 RNASET2O00584 256 aaKnown RBP18.51■□□□□ 0.55
VPS28-213ENST00000530983 ETFAP13804 333 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 ZNF30P17039 623 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 TIA1P31483 386 aaKnown RBP eCLIP18.51■□□□□ 0.55
VPS28-213ENST00000530983 UGT2B10P36537 528 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 CRATP43155 626 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 CTSCP53634 463 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 TUBA1BP68363 451 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 TIGD6Q17RP2 521 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 ZNF404Q494X3 552 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 SPIN4Q56A73 249 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 TUBA1AQ71U36 451 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 KLHDC8AQ8IYD2 350 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 SLAIN1Q8ND83 568 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 OR10G2Q8NGC3 310 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 OR4C15Q8NGM1 316 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 OR2A12Q8NGT7 310 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 PSMA8Q8TAA3 256 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 MYLIPQ8WY64 445 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 DACH2Q96NX9 599 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 CTRCQ99895 268 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 SIAEQ9HAT2 523 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 RAD18Q9NS91 495 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 PCDHGA2Q9Y5H1 932 aa18.51■□□□□ 0.55
VPS28-213ENST00000530983 PRAMEF25A6NGN4 478 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 A8MU76 341 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 NPC1O15118 1278 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 AOC2O75106 756 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 TNFRSF21O75509 655 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 CDK1P06493 297 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 OR1E2P47887 323 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 DCDC1P59894 354 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 HBA1P69905 142 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 SYTL3Q4VX76 610 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 HENMT1Q5T8I9 393 aaKnown RBP18.5■□□□□ 0.55
VPS28-213ENST00000530983 ANGPTL8Q6UXH0 198 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 TMEM25Q86YD3 366 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 OR4K1Q8NGD4 311 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 OR56A3Q8NH54 315 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 OR52J3Q8NH60 311 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 MYDGFQ969H8 173 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 PKP4Q99569 1192 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 NIPSNAP1Q9BPW8 284 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 RIOK2Q9BVS4 552 aaKnown RBP18.5■□□□□ 0.55
VPS28-213ENST00000530983 TRAV19A0A0A6YYK7 116 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 METTL15A6NJ78 407 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 VIPR1P32241 457 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 GRK5P34947 590 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 CTSKP43235 329 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 NUDT6P53370 316 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 TPTEP56180 551 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 RPS13P62277 151 aaKnown RBP18.5■□□□□ 0.55
VPS28-213ENST00000530983 RAVER1Q8IY67 606 aaKnown RBP18.5■□□□□ 0.55
VPS28-213ENST00000530983 NEIL2Q969S2 332 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 TMEM159Q96B96 161 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 FAM83CQ9BQN1 747 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 CFHR5Q9BXR6 569 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 MMP27Q9H306 513 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 SPASTQ9UBP0 616 aa18.5■□□□□ 0.55
VPS28-213ENST00000530983 GABRB1P18505 474 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 IDH2P48735 452 aaKnown RBP18.49■□□□□ 0.55
VPS28-213ENST00000530983 CDH12P55289 794 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 BRAT1Q6PJG6 821 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 SLC46A3Q7Z3Q1 461 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 RASGEF1AQ8N9B8 481 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 SLC46A2Q9BY10 475 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 GPR83Q9NYM4 423 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 ZNF226Q9NYT6 803 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 MAPRE3Q9UPY8 281 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 CCL26Q9Y258 94 aa18.49■□□□□ 0.55
VPS28-213ENST00000530983 CATP04040 527 aaKnown RBP18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms