RNA–Protein interactions for RNA: ENST00000526734.5

VPS28-206, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2

Gene VPS28, Length 570 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-206ENST00000526734 DEFB134Q4QY38 66 aa19.47■□□□□ 0.71
VPS28-206ENST00000526734 FAAH2Q6GMR7 532 aa19.47■□□□□ 0.71
VPS28-206ENST00000526734 CMC1Q7Z7K0 106 aa19.47■□□□□ 0.71
VPS28-206ENST00000526734 NOA1Q8NC60 698 aaKnown RBP19.47■□□□□ 0.71
VPS28-206ENST00000526734 UTP15Q8TED0 518 aaKnown RBP19.47■□□□□ 0.71
VPS28-206ENST00000526734 MOCOSQ96EN8 888 aa19.47■□□□□ 0.71
VPS28-206ENST00000526734 UNKQ9C0B0 810 aaKnown RBP19.47■□□□□ 0.71
VPS28-206ENST00000526734 DMGDHQ9UI17 866 aaKnown RBP19.47■□□□□ 0.71
VPS28-206ENST00000526734 A0A088AWK7 358 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 SYCE1LA8MT33 242 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 TAPBPO15533 448 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 JRKO75564 520 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 ZNF888P0CJ79 500 aaPredicted RBP19.46■□□□□ 0.71
VPS28-206ENST00000526734 ZNF10P21506 573 aaPredicted RBP19.46■□□□□ 0.71
VPS28-206ENST00000526734 SERPINB8P50452 374 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 LAPTM5Q13571 262 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 SLBPQ14493 270 aaKnown RBP eCLIP19.46■□□□□ 0.71
VPS28-206ENST00000526734 FAM83EQ2M2I3 478 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 PAGE2BQ5JRK9 111 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 B3GNTL1Q67FW5 361 aaPredicted RBP19.46■□□□□ 0.71
VPS28-206ENST00000526734 TAOK1Q7L7X3 1001 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 CPEB2Q7Z5Q1 589 aaKnown RBP19.46■□□□□ 0.71
VPS28-206ENST00000526734 ISCA2Q86U28 154 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 PLPP5Q8NEB5 264 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 RHEBL1Q8TAI7 183 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 CREB3L4Q8TEY5 395 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 UBTD2Q8WUN7 234 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 GAL3ST3Q96A11 431 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 TBC1D20Q96BZ9 403 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 WDR34Q96EX3 536 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 PTCD3Q96EY7 689 aaKnown RBP19.46■□□□□ 0.71
VPS28-206ENST00000526734 IMMP1LQ96LU5 166 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 ALG9Q9H6U8 611 aa19.46■□□□□ 0.71
VPS28-206ENST00000526734 MAGEB17A8MXT2 336 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 CLEC3AO75596 197 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 WFS1O76024 890 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 FHP07954 510 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 SOX11P35716 441 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 HSPA7P48741 367 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 TLR1Q15399 786 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 TBCCQ15814 346 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 C18orf21Q32NC0 220 aaPredicted RBP19.45■□□□□ 0.7
VPS28-206ENST00000526734 PLEKHN1Q494U1 663 aaPredicted RBP19.45■□□□□ 0.7
VPS28-206ENST00000526734 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP19.45■□□□□ 0.76e-7■■■■■ 139.2
VPS28-206ENST00000526734 SNX31Q8N9S9 440 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 IFT81Q8WYA0 676 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 PEX11GQ96HA9 241 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 ATOH8Q96SQ7 321 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 MESP1Q9BRJ9 268 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 CD244Q9BZW8 370 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 CDC42EP4Q9H3Q1 356 aaKnown RBP19.45■□□□□ 0.7
VPS28-206ENST00000526734 SNX15Q9NRS6 342 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 IGSF5Q9NSI5 407 aa19.45■□□□□ 0.7
VPS28-206ENST00000526734 ZNF860A6NHJ4 632 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 ANKDD1BA6NHY2 528 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 CHST10O43529 356 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 UQCRHP07919 91 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 SMIM10L1P0DMW3 83 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 RNH1P13489 461 aaKnown RBP19.44■□□□□ 0.7
VPS28-206ENST00000526734 TSFMP43897 325 aaKnown RBP19.44■□□□□ 0.7
VPS28-206ENST00000526734 SERPINB9P50453 376 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 HYAL2Q12891 473 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 EXT1Q16394 746 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 HIST2H2ACQ16777 129 aaPredicted RBP19.44■□□□□ 0.7
VPS28-206ENST00000526734 TOR1AIP1Q5JTV8 583 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 MROH9Q5TGP6 573 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 PLAG1Q6DJT9 500 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 HIST2H2AA3Q6FI13 130 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 KLC3Q6P597 504 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 ANKRD37Q7Z713 158 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 ADAMTS18Q8TE60 1221 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 UBE2E3Q969T4 207 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 SMIM10Q96HG1 83 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 FAR2Q96K12 515 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 ZBTB20Q9HC78 741 aaPredicted RBP19.44■□□□□ 0.7
VPS28-206ENST00000526734 LANCL2Q9NS86 450 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 LUZP4Q9P127 313 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 TEKT2Q9UIF3 430 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 PCDHGA10Q9Y5H3 936 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 IKBKGQ9Y6K9 419 aa19.44■□□□□ 0.7
VPS28-206ENST00000526734 DYTNA2CJ06 578 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 SYNDIG1LA6NDD5 238 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 SUPT3HB4E1H0 165 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 PSMD12O00232 456 aaPredicted RBP19.43■□□□□ 0.7
VPS28-206ENST00000526734 CCNT2O60583 730 aaKnown RBP19.43■□□□□ 0.7
VPS28-206ENST00000526734 SUPT3HO75486 399 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 ZIC2O95409 532 aaPredicted RBP19.43■□□□□ 0.7
VPS28-206ENST00000526734 C2P06681 752 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 INHBAP08476 426 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 SERPINB1P30740 379 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 CASP2P42575 452 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 EFNA3P52797 238 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 RHAGQ02094 409 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 PCDH1Q08174 1060 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 DLG1Q12959 904 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 E2F2Q14209 437 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 ABRAXAS2Q15018 415 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 ACAP2Q15057 778 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 NSDHLQ15738 373 aa19.43■□□□□ 0.7
VPS28-206ENST00000526734 UAP1Q16222 522 aaPredicted RBP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms