RNA–Protein interactions for RNA: ENST00000511040.5

DDX41-212, Transcript of DEAD-box helicase 41, humanhuman

TSL 3

Gene DDX41, Length 721 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-212ENST00000511040 PGDP52209 483 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 EFNA3P52797 238 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 ALDH18A1P54886 795 aaKnown RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 EEF1A2Q05639 463 aaKnown RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 MINDY4Q4G0A6 757 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 ASB18Q6ZVZ8 466 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 ABHD13Q7L211 337 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 PRICKLE2Q7Z3G6 844 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 VN1R5Q7Z5H4 357 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 PTGR2Q8N8N7 351 aaPredicted RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 TRPV3Q8NET8 790 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 PHF21BQ96EK2 531 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 WDR34Q96EX3 536 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 PTCD3Q96EY7 689 aaKnown RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 PEX11GQ96HA9 241 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 TGIF2Q9GZN2 237 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 SLC6A16Q9GZN6 736 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 EHD1Q9H4M9 534 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 C14orf105Q9NVL8 296 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 PSMC3IPQ9P2W1 217 aaPredicted RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 MKL2Q9ULH7 1088 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 ZNF490Q9ULM2 529 aaPredicted RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 KALRNO60229 2985 aa13.22□□□□□ -0.29
DDX41-212ENST00000511040 SETXQ7Z333 2677 aaKnown RBP13.22□□□□□ -0.29
DDX41-212ENST00000511040 BOD1L1Q8NFC6 3051 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 CCDC189A1A4V9 331 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 B8ZZF3 427 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 CHST10O43529 356 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 KLK8O60259 260 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 SH3BGRLO75368 114 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 CDC123O75794 336 aaPredicted RBP13.21□□□□□ -0.29
DDX41-212ENST00000511040 SERPINA6P08185 405 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 PCNAP12004 261 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 COL6A2P12110 1019 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 ACPPP15309 386 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 EPB42P16452 691 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 EEF1DP29692 281 aaKnown RBP13.21□□□□□ -0.29
DDX41-212ENST00000511040 HNRNPH1P31943 449 aaKnown RBP13.21□□□□□ -0.29
DDX41-212ENST00000511040 TSNAXIP1Q2TAA8 658 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 TUBB8Q3ZCM7 444 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 TCTN3Q6NUS6 607 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 TIFABQ6ZNK6 161 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 MYLK4Q86YV6 388 aaPredicted RBP13.21□□□□□ -0.29
DDX41-212ENST00000511040 PARP9Q8IXQ6 854 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 AMER2Q8N7J2 671 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 CLEC1AQ8NC01 280 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 OR11G2Q8NGC1 345 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 MTBPQ96DY7 904 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 CCDC77Q9BR77 488 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 EFCAB11Q9BUY7 163 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 NUDT9Q9BW91 350 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 VN1R1Q9GZP7 353 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 RHBGQ9H310 441 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 NT5DC2Q9H857 520 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 ZNF160Q9HCG1 818 aa13.21□□□□□ -0.29
DDX41-212ENST00000511040 HEMK1Q9Y5R4 338 aaPredicted RBP13.21□□□□□ -0.29
DDX41-212ENST00000511040 SMG1Q96Q15 3661 aaKnown RBP13.21□□□□□ -0.3
DDX41-212ENST00000511040 COL6A6A6NMZ7 2263 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 IQANK1A0A1B0GTG1 560 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 LRIT2A6NDA9 550 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 ANKDD1BA6NHY2 528 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 PYCARD-AS1I3L0S3 204 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 ERI3O43414 337 aaKnown RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 SMIM24O75264 130 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 CEACAM4O75871 244 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 SMIM10L1P0DMW3 83 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 PYGBP11216 843 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 ITGA3P26006 1051 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 HSD17B3P37058 310 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 STXBP1P61764 594 aaKnown RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 BTN3A2P78410 334 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 LAPTM5Q13571 262 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 GTF2H2Q13888 395 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 NAA30Q147X3 362 aaPredicted RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 TBCCQ15814 346 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 HIST2H2ACQ16777 129 aaPredicted RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 PAGE2BQ5JRK9 111 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 HIST2H2AA3Q6FI13 130 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 GTF2H2CQ6P1K8 395 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 LANCL3Q6ZV70 420 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 GOLGA7Q7Z5G4 137 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 GALNT16Q8N428 558 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 TTLQ8NG68 377 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 EPS8L3Q8TE67 593 aaKnown RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 MS4A6EQ96DS6 147 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 SMIM10Q96HG1 83 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 MRPL57Q9BQC6 102 aaKnown RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 PITHD1Q9GZP4 211 aaPredicted RBP13.2□□□□□ -0.3
DDX41-212ENST00000511040 ATP13A2Q9NQ11 1180 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 GPR83Q9NYM4 423 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 TMEM216Q9P0N5 145 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 COPG2Q9UBF2 871 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 FETUBQ9UGM5 382 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 NUP210LQ5VU65 1888 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 SCN2AQ99250 2005 aa13.2□□□□□ -0.3
DDX41-212ENST00000511040 IGHV3-20A0A0C4DH32 117 aa13.19□□□□□ -0.3
DDX41-212ENST00000511040 A0A1W2PPM1 405 aa13.19□□□□□ -0.3
DDX41-212ENST00000511040 URADA6NGE7 173 aa13.19□□□□□ -0.3
DDX41-212ENST00000511040 FAM227AF5H4B4 570 aa13.19□□□□□ -0.3
DDX41-212ENST00000511040 E2F3O00716 465 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms