RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 ZDHHC2Q9UIJ5 367 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 TRAF6Q9Y4K3 522 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 MAU2Q9Y6X3 613 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 KIF26BQ2KJY2 2108 aa11.32□□□□□ -0.6
CUX1-210ENST00000497815 A0A1B0GX78 115 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ZNF860A6NHJ4 632 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 C4orf51C9J302 202 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 STMND1H3BQB6 276 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 DSCR3O14972 297 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ERI3O43414 337 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 ULK1O75385 1050 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ETHE1O95571 254 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 DLGAP3O95886 979 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 TBX6O95947 436 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 HBQ1P09105 142 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ALOX12P18054 663 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 GCGRP47871 477 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 OR1D4P47884 311 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 RAP1GDS1P52306 607 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 STXBP1P61764 594 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 GALNT1Q10472 559 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 TBC1D25Q3MII6 688 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 DEFB134Q4QY38 66 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 MANEAQ5SRI9 462 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 YOD1Q5VVQ6 348 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 KHDRBS2Q5VWX1 349 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 KANK2Q63ZY3 851 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 RHBDD2Q6NTF9 364 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 FAM199XQ6PEV8 388 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 CHSY3Q70JA7 882 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ABHD13Q7L211 337 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 TIPARPQ7Z3E1 657 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 DDIASQ8IXT1 998 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 CLYBLQ8N0X4 340 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ARHGEF39Q8N4T4 335 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ZNF781Q8N8C0 355 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 FAM76AQ8TAV0 307 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 RAB3IL1Q8TBN0 382 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 UTP15Q8TED0 518 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 MR1Q95460 341 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 MS4A6EQ96DS6 147 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 MMABQ96EY8 250 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 NAF1Q96HR8 494 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 SEC16BQ96JE7 1060 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 ZNF578Q96N58 590 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 SORT1Q99523 831 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 C17orf62Q9BQA9 187 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 B3GNT4Q9C0J1 378 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 REXO4Q9GZR2 422 aaKnown RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 AKIRIN1Q9H9L7 192 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 ANKHQ9HCJ1 492 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 SLC12A4Q9UP95 1085 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 RAP2CQ9Y3L5 183 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 NAALAD2Q9Y3Q0 740 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 TMEM184BQ9Y519 407 aaPredicted RBP11.31□□□□□ -0.6
CUX1-210ENST00000497815 PTGDR2Q9Y5Y4 395 aa11.31□□□□□ -0.6
CUX1-210ENST00000497815 SPTBN4Q9H254 2564 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 URADA6NGE7 173 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 SGK494L7N484 410 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 MEN1O00255 615 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 FOXE1O00358 373 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 RTCAO00442 366 aaKnown RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 FOXS1O43638 330 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 RAD1O60671 282 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 SNNO75324 88 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 RDH16O75452 317 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 SKAP2O75563 359 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 KLHL18O94889 574 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 CHEK2O96017 543 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 KLK3P07288 261 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 CCNYL3P0C7X3 344 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 AGXTP21549 392 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 PTX3P26022 381 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 RORAP35398 523 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 AVPR1BP47901 424 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 EMP3P54852 163 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 OLR1P78380 273 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 BTN3A2P78410 334 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 DCDP81605 110 aaKnown RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 HMGCS1Q01581 520 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 ABHD18Q0P651 414 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 TGIF1Q15583 401 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 GARNL3Q5VVW2 1013 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 LCN10Q6JVE6 187 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 TRIM40Q6P9F5 258 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 PDSS2Q86YH6 399 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 DSELQ8IZU8 1212 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 NLGN4XQ8N0W4 816 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 NLGN4YQ8NFZ3 816 aaPredicted RBP11.3□□□□□ -0.6
CUX1-210ENST00000497815 OR2L5Q8NG80 312 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 TWIST2Q8WVJ9 160 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 CKAP2Q8WWK9 683 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 GATA6Q92908 595 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 GAL3ST3Q96A11 431 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 COL26A1Q96A83 441 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 FAR2Q96K12 515 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 GBP5Q96PP8 586 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 CENPKQ9BS16 269 aa11.3□□□□□ -0.6
CUX1-210ENST00000497815 YIPF2Q9BWQ6 316 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms