RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	SF1	Q15637	639 aa	Known RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	ZKSCAN8	Q15776	578 aa	Predicted RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	PTCHD3	Q3KNS1	767 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	TMTC4	Q5T4D3	741 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	TMEM207	Q6UWW9	146 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	TICAM1	Q8IUC6	712 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	DSEL	Q8IZU8	1212 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	TCAIM	Q8N3R3	496 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	D2HGDH	Q8N465	521 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	FBXO15	Q8NCQ5	510 aa	Predicted RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	GIMAP7	Q8NHV1	300 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	KCTD4	Q8WVF5	259 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	ANKRD49	Q8WVL7	239 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	SMPDL3A	Q92484	453 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	KIAA1191	Q96A73	305 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	UBXN10	Q96LJ8	280 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	PKP4	Q99569	1192 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	RBCK1	Q9BYM8	510 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	UNK	Q9C0B0	810 aa	Known RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	XKR8	Q9H6D3	395 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	SOX17	Q9H6I2	414 aa	Predicted RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	ALG9	Q9H6U8	611 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	CNOT10	Q9H9A5	744 aa	Known RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	KCNK9	Q9NPC2	374 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	PCMTD2	Q9NV79	361 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	INTS7	Q9NVH2	962 aa	Known RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	UTP6	Q9NYH9	597 aa	Known RBP	8.35	□□□□□ -1.07
USP4-213	ENST00000488520	SPATA7	Q9P0W8	599 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	TMCO1	Q9UM00	188 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	PLAGL1	Q9UM63	463 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	PDE10A	Q9Y233	779 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	OARD1	Q9Y530	152 aa		8.35	□□□□□ -1.07
USP4-213	ENST00000488520	CSMD2	Q7Z408	3487 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	DCHS2	Q6V1P9	2916 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	OTOG	Q6ZRI0	2925 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520		A0A1W2PPM1	405 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	HMX2	A2RU54	273 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	OR5K3	A6NET4	321 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NCF1B	A6NI72	391 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NCF1C	A8MVU1	366 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	SUPT3H	B4E1H0	165 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	TMEM150C	B9EJG8	249 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	MASP2	O00187	686 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	GLRA3	O75311	464 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	SUPT3H	O75486	399 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CCNDBP1	O95273	360 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ZBTB11	O95625	1053 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CAPN1	P07384	714 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ESRRA	P11474	423 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NEFH	P12036	1026 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	GFAP	P14136	432 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	PRF1	P14222	555 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NCF1	P14598	390 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	H2AFX	P16104	143 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CDH3	P22223	829 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ELAVL4	P26378	380 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	BDKRB1	P46663	353 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	PNLIPRP1	P54315	467 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	RRAD	P55042	308 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ZNF844	Q08AG5	666 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	KIR2DS3	Q14952	304 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	TSN	Q15631	228 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CCDC153	Q494R4	210 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	HSP90B2P	Q58FF3	399 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CDKL4	Q5MAI5	379 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	SULT1C3	Q6IMI6	304 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CAPN13	Q6MZZ7	669 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ZNF517	Q6ZMY9	492 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	MED25	Q71SY5	747 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	KMT5C	Q86Y97	462 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520		Q8N3U1	123 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	C2orf73	Q8N5S3	287 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	OR2L8	Q8NGY9	312 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	RHEBL1	Q8TAI7	183 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	N4BP2L2	Q92802	583 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	EXT2	Q93063	718 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	DMRTB1	Q96MA1	342 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CD180	Q99467	661 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	SMAD5	Q99717	465 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	MRPL57	Q9BQC6	102 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CAPS2	Q9BXY5	557 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NLN	Q9BYT8	704 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	SLC7A5P2	Q9GIP4	190 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ILKAP	Q9H0C8	392 aa	Predicted RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	PCBD2	Q9H0N5	130 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	VIPAS39	Q9H9C1	493 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	LIN7B	Q9HAP6	207 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	CIDEB	Q9UHD4	219 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	LGALS13	Q9UHV8	139 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	MID2	Q9UJV3	735 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ADAMTS6	Q9UKP5	1117 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	B3GNT3	Q9Y2A9	372 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	NTNG1	Q9Y2I2	539 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ANGPTL3	Q9Y5C1	460 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	TNPO3	Q9Y5L0	923 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	COPG1	Q9Y678	874 aa	Known RBP	8.34	□□□□□ -1.07
USP4-213	ENST00000488520	ADGRG4	Q8IZF6	3080 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520	HEATR5B	Q9P2D3	2071 aa		8.34	□□□□□ -1.07
USP4-213	ENST00000488520		A0A096LPE4	126 aa		8.33	□□□□□ -1.08
USP4-213	ENST00000488520		A0A1W2PPZ6	126 aa		8.33	□□□□□ -1.08

Retrieved 100 of 20,778 RNA–protein pairs in 68.7 ms