RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 GUCA1CO95843 209 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 TCP1P17987 556 aaKnown RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 TNFRSF8P28908 595 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 EEF1DP29692 281 aaKnown RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 ELK3P41970 407 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SCTRP47872 440 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SLC26A5P58743 744 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SRSF11Q05519 484 aaKnown RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 NAA30Q147X3 362 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 KRTCAP3Q53RY4 240 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SBSNQ6UWP8 590 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 RPTNQ6XPR3 784 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SYDE1Q6ZW31 735 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 MRGPRGQ86SM5 289 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 ZNF808Q8N4W9 903 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 THAP3Q8WTV1 239 aaPredicted RBP16.43■□□□□ 0.22
COL7A1-208ENST00000470076 CFAP36Q96G28 342 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 SCMH1Q96GD3 660 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 OLFM1Q99784 485 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 KLHL1Q9NR64 748 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 ANKRD10Q9NXR5 420 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 CHMP2BQ9UQN3 213 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 DYRK1BQ9Y463 629 aa16.43■□□□□ 0.22
COL7A1-208ENST00000470076 ASPDHA6ND91 283 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 URADA6NGE7 173 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 GABRR3A8MPY1 467 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 SLC19A2O60779 497 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 ZNF888P0CJ79 500 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-208ENST00000470076 PGGT1BP53609 377 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 OLR1P78380 273 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 OC90Q02509 493 aaPredicted RBP16.42■□□□□ 0.22
COL7A1-208ENST00000470076 FRG1Q14331 258 aaKnown RBP16.42■□□□□ 0.22
COL7A1-208ENST00000470076 STEAP4Q687X5 459 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 SPINK14Q6IE38 97 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 TRMT10BQ6PF06 316 aaKnown RBP16.42■□□□□ 0.22
COL7A1-208ENST00000470076 FAM98AQ8NCA5 519 aaKnown RBP16.42■□□□□ 0.22
COL7A1-208ENST00000470076 TRPV3Q8NET8 790 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 ELP5Q8TE02 316 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 ANKRD7Q92527 254 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 AIF1LQ9BQI0 150 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 SPNS1Q9H2V7 528 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 PELI2Q9HAT8 420 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 TEX264Q9Y6I9 313 aa16.42■□□□□ 0.22
COL7A1-208ENST00000470076 CSMD1Q96PZ7 3565 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 NDC80O14777 642 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 MAN1A2O60476 641 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 PRMT3O60678 531 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 B4GALT2O60909 372 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 DNAJB6O75190 326 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 ZNF37AP17032 561 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 REEP5Q00765 189 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 ALDH6A1Q02252 535 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 PPP1R3AQ16821 1122 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 HP1BP3Q5SSJ5 553 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 BNC2Q6ZN30 1099 aaPredicted RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 QSOX2Q6ZRP7 698 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 THOC6Q86W42 341 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 RPS19BP1Q86WX3 136 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 SRRM1Q8IYB3 904 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 NKAPQ8N5F7 415 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 UTP15Q8TED0 518 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 MAGED4Q96JG8 741 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 GPR137Q96N19 417 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 TSNARE1Q96NA8 513 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 RUNDC3BQ96NL0 473 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 PTCHD1Q96NR3 888 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 HES7Q9BYE0 225 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 UNKQ9C0B0 810 aaKnown RBP16.41■□□□□ 0.22
COL7A1-208ENST00000470076 SLC6A16Q9GZN6 736 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 CDCP1Q9H5V8 836 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 ZFATQ9P243 1243 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 LRFN1Q9P244 771 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 SH3BGRL2Q9UJC5 107 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 KCNE2Q9Y6J6 123 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 PKDREJQ9NTG1 2253 aa16.41■□□□□ 0.22
COL7A1-208ENST00000470076 GTF3C1Q12789 2109 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 FAM227AF5H4B4 570 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 PSMD12O00232 456 aaPredicted RBP16.4■□□□□ 0.22
COL7A1-208ENST00000470076 NEURL1O76050 574 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 B3GALT4O96024 378 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 SP1P08047 785 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 RNH1P13489 461 aaKnown RBP16.4■□□□□ 0.22
COL7A1-208ENST00000470076 PRF1P14222 555 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 CDKL1Q00532 357 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 SLC25A25Q6KCM7 469 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 XKRXQ6PP77 449 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 NXPE4Q6UWF7 544 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 GALNTL5Q7Z4T8 443 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 TMPRSS11BQ86T26 416 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 MCEMP1Q8IX19 187 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 ANKRD53Q8N9V6 530 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 PWWP2AQ96N64 755 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 FRMD6Q96NE9 622 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 WDR83Q9BRX9 315 aaKnown RBP16.4■□□□□ 0.22
COL7A1-208ENST00000470076 CHST11Q9NPF2 352 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 IKZF3Q9UKT9 509 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 SLC22A14Q9Y267 594 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 ZNF835Q9Y2P0 537 aa16.4■□□□□ 0.22
COL7A1-208ENST00000470076 NCOA6Q14686 2063 aaPredicted RBP16.39■□□□□ 0.21
COL7A1-208ENST00000470076 TCRBV16S1A1N1A0A5B0 115 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms