RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 REPS1Q96D71 796 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MMABQ96EY8 250 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 SLC45A3Q96JT2 553 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MAGEB10Q96LZ2 347 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ZNF382Q96SR6 550 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 KLHL31Q9H511 634 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 VIPAS39Q9H9C1 493 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ANKHQ9HCJ1 492 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 GPN3Q9UHW5 284 aaPredicted RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ADGRE2Q9UHX3 823 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 ZNF225Q9UK10 706 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 TSC22D4Q9Y3Q8 395 aa11.35□□□□□ -0.59
VPS13D-204ENST00000469054 MRPS18BQ9Y676 258 aaKnown RBP11.35□□□□□ -0.59
VPS13D-204ENST00000469054 IGF2RP11717 2491 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 HEATR5BQ9P2D3 2071 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 A0A1B0GTL3 188 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 TM9SF1O15321 606 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 PRPF4O43172 522 aaKnown RBP eCLIP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ZNF888P0CJ79 500 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 SMIM10L1P0DMW3 83 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ALOX12P18054 663 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 IL1RNP18510 177 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 FBLP22087 321 aaKnown RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ALDH3A1P30838 453 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 HPDP32754 393 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 PIK3CBP42338 1070 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ETV4P43268 484 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 TMPRSS3P57727 454 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 LCP2Q13094 533 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 DSG2Q14126 1118 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ZRSR2Q15696 482 aaKnown RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 ADPRMQ3LIE5 342 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 TOR1AIP1Q5JTV8 583 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 CFAP157Q5JU67 520 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 LETMD1Q6P1Q0 360 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 PRSS41Q7RTY9 318 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 AMER3Q8N944 861 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 OR9A4Q8NGU2 314 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 HUS1BQ8NHY5 278 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 WDR20Q8TBZ3 569 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 STARD8Q92502 1023 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 FKBP10Q96AY3 582 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 TLCD1Q96CP7 247 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 MS4A6EQ96DS6 147 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 SMIM10Q96HG1 83 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 GATA5Q9BWX5 397 aaPredicted RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 MS4A8Q9BY19 250 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 REXO4Q9GZR2 422 aaKnown RBP11.34□□□□□ -0.59
VPS13D-204ENST00000469054 AICDAQ9GZX7 198 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 GSTO2Q9H4Y5 243 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 PRM3Q9NNZ6 103 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 KCNK9Q9NPC2 374 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 STK38LQ9Y2H1 464 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 CHD8Q9HCK8 2581 aa11.34□□□□□ -0.59
VPS13D-204ENST00000469054 UQCRHLA0A096LP55 91 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 VSTM2BA6NLU5 285 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ZNF891A8MT65 544 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 K7ENP7 123 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 SGK494L7N484 410 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 GALR3O60755 368 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 CNOT3O75175 753 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 CREG1O75629 220 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 KLF7O75840 302 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 KLHL18O94889 574 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 OR4F21O95013 312 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ZWINTO95229 277 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 RECKO95980 971 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 TGFB1P01137 390 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 UQCRHP07919 91 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 HNRNPH1P31943 449 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 NEK2P51955 445 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 PKNOX1P55347 436 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 RAB8AP61006 207 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 MAGOHP61326 146 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 RPS18P62269 152 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 SKP1P63208 163 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 PHEXP78562 749 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 MC1RQ01726 317 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 VAC14Q08AM6 782 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ASPHQ12797 758 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 DDX39BQ13838 428 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 DEFB134Q4QY38 66 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 C10orf62Q5T681 223 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 AGBL2Q5U5Z8 902 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 NIPAL1Q6NVV3 410 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 INO80CQ6PI98 192 aaPredicted RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 FRMD7Q6ZUT3 714 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 GPRIN3Q6ZVF9 776 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 SYVN1Q86TM6 617 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 PDSS2Q86YH6 399 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ZSCAN1Q8NBB4 408 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 OR2L5Q8NG80 312 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 GAL3ST3Q96A11 431 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 CMTM7Q96FZ5 175 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 MTERF1Q99551 399 aaKnown RBP11.33□□□□□ -0.6
VPS13D-204ENST00000469054 MECRQ9BV79 373 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 SLC26A1Q9H2B4 701 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 ACTL8Q9H568 366 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 CPNE5Q9HCH3 593 aa11.33□□□□□ -0.6
VPS13D-204ENST00000469054 PSD3Q9NYI0 1048 aa11.33□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms