RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 CNOT10Q9H9A5 744 aaKnown RBP18■□□□□ 0.47
COL7A1-207ENST00000467985 NTNG1Q9Y2I2 539 aa18■□□□□ 0.47
COL7A1-207ENST00000467985 MTO1Q9Y2Z2 717 aaKnown RBP18■□□□□ 0.47
COL7A1-207ENST00000467985 MAGEB17A8MXT2 336 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 CXorf49A8MYA2 514 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SEMA7AO75326 666 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 H2AFYO75367 372 aaKnown RBP17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SEC24DO94855 1032 aaPredicted RBP17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SLU7O95391 586 aaKnown RBP17.99■□□□□ 0.47
COL7A1-207ENST00000467985 FHP07954 510 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 CCDC166P0CW27 439 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 ITGAMP11215 1152 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 STMN1P16949 149 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SLC6A12P48065 614 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 ATP6V0D1P61421 351 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 ABRAXAS2Q15018 415 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 TGFBIQ15582 683 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 NSDHLQ15738 373 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 INAQ16352 499 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 TEX35Q5T0J7 233 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 ABHD17BQ5VST6 288 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 FAM180AQ6UWF9 173 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 LANCL3Q6ZV70 420 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 NOA1Q8NC60 698 aaKnown RBP17.99■□□□□ 0.47
COL7A1-207ENST00000467985 ST6GALNAC3Q8NDV1 305 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 PLPP5Q8NEB5 264 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 TTLQ8NG68 377 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 OR1N1Q8NGS0 311 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 GRHL3Q8TE85 626 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 TBC1D20Q96BZ9 403 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 RHBDF1Q96CC6 855 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 PEX11GQ96HA9 241 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SLC6A16Q9GZN6 736 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 SPNS1Q9H2V7 528 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 LANCL2Q9NS86 450 aa17.99■□□□□ 0.47
COL7A1-207ENST00000467985 POLEQ07864 2286 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 ZNF860A6NHJ4 632 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 PIAS1O75925 651 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 WDR47O94967 919 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 WISP3O95389 354 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 SERPINA6P08185 405 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 CELA2AP08217 269 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 ZNF888P0CJ79 500 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 EDN3P14138 238 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 GSTM2P28161 218 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 SPRP35270 261 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 RHAGQ02094 409 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 RBBP5Q15291 538 aaKnown RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 BTBD16Q32M84 506 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 GLE1Q53GS7 698 aaKnown RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 GPSM1Q86YR5 675 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 BCORP1Q8N888 145 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 ANKRD53Q8N9V6 530 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 CATSPER1Q8NEC5 780 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 SUN3Q8TAQ9 357 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 M1APQ8TC57 530 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 FBXO25Q8TCJ0 367 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 UTP15Q8TED0 518 aaKnown RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 FAR1Q8WVX9 515 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 SEC16BQ96JE7 1060 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 LRRC1Q9BTT6 524 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 PITHD1Q9GZP4 211 aaPredicted RBP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.98■□□□□ 0.47
COL7A1-207ENST00000467985 CAB39LQ9H9S4 337 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 PLA2G3Q9NZ20 509 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 GPRC5BQ9NZH0 403 aa17.98■□□□□ 0.47
COL7A1-207ENST00000467985 TEX15Q9BXT5 2789 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 CPAMD8Q8IZJ3 1885 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 CHST10O43529 356 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 C1GALT1C1LP0DN25 315 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 STX2P32856 288 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 GGT5P36269 586 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 MAGEA4P43358 317 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 GPX6P59796 221 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 RAB10P61026 200 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 STXBP1P61764 594 aaKnown RBP17.97■□□□□ 0.47
COL7A1-207ENST00000467985 ACTN3Q08043 901 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-207ENST00000467985 NAB1Q13506 487 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 ZKSCAN8Q15776 578 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-207ENST00000467985 GRTP1Q5TC63 336 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 SLCO4C1Q6ZQN7 724 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 CCDC25Q86WR0 208 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 CTAGE3PQ8IX95 158 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 KRT78Q8N1N4 520 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 OR5T3Q8NGG3 340 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 ZNF354BQ96LW1 612 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 LPAR4Q99677 370 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 EHD1Q9H4M9 534 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 RRAGDQ9NQL2 400 aaPredicted RBP17.97■□□□□ 0.47
COL7A1-207ENST00000467985 STMN3Q9NZ72 180 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 SLC5A6Q9Y289 635 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 SCN2AQ99250 2005 aa17.97■□□□□ 0.47
COL7A1-207ENST00000467985 ICE1Q9Y2F5 2266 aa17.96■□□□□ 0.47
COL7A1-207ENST00000467985 IGHV3-20A0A0C4DH32 117 aa17.96■□□□□ 0.47
COL7A1-207ENST00000467985 OR2W5A6NFC9 320 aa17.96■□□□□ 0.47
COL7A1-207ENST00000467985 PHGDHO43175 533 aaKnown RBP17.96■□□□□ 0.47
COL7A1-207ENST00000467985 CDC123O75794 336 aaPredicted RBP17.96■□□□□ 0.47
COL7A1-207ENST00000467985 WDPCPO95876 746 aa17.96■□□□□ 0.47
COL7A1-207ENST00000467985 RNH1P13489 461 aaKnown RBP17.96■□□□□ 0.47
COL7A1-207ENST00000467985 HPDP32754 393 aaPredicted RBP17.96■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 86.1 ms