RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 NRP2O60462 931 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 WDR47O94967 919 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 GSTA1P08263 222 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 RBP1P09455 135 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 MTHFD2P13995 350 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 NPPBP16860 134 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 KRT15P19012 456 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 HRH2P25021 359 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 GGT5P36269 586 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 DCDP81605 110 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 NCF4Q15080 339 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 C18orf21Q32NC0 220 aaPredicted RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 ZC3H12BQ5HYM0 836 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 FAM69BQ5VUD6 431 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 RNF44Q7L0R7 432 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 THOC6Q86W42 341 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 PAQR7Q86WK9 346 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 GALNT16Q8N428 558 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 UBTD2Q8WUN7 234 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 SCYL1Q96KG9 808 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 IP6K3Q96PC2 410 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 NDC1Q9BTX1 674 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 TMEM109Q9BVC6 243 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 CNOT10Q9H9A5 744 aaKnown RBP11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 TXLNGQ9NUQ3 528 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 TMEM184CQ9NVA4 438 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 XPR1Q9UBH6 696 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 LGALS13Q9UHV8 139 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 SH2B3Q9UQQ2 575 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 SLC22A14Q9Y267 594 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 NUP210LQ5VU65 1888 aa11.32□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF469Q96JG9 3925 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 FOXO6A8MYZ6 492 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 KLK8O60259 260 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CTSVO60911 334 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 KLF7O75840 302 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 PYGBP11216 843 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CDH1P12830 882 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CD99P14209 185 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 EZRP15311 586 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 GDF5P43026 501 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 HSPA7P48741 367 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ARSFP54793 590 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 RELAQ04206 551 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 SSPNQ14714 243 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 SETDB1Q15047 1291 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 BEND6Q5SZJ8 279 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 MLIPQ5VWP3 458 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 SH2D5Q6ZV89 423 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ADCK2Q7Z695 626 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 MRGPRGQ86SM5 289 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 MCATQ8IVS2 390 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF808Q8N4W9 903 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF655Q8N720 491 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CLEC1AQ8NC01 280 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 NEIL2Q969S2 332 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 GBP5Q96PP8 586 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ZFYVE21Q9BQ24 234 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 MRPL57Q9BQC6 102 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 TMUB1Q9BVT8 246 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 MRPL46Q9H2W6 279 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ZBTB20Q9HC78 741 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 ENAMQ9NRM1 1142 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 IFT80Q9P2H3 777 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CPSF2Q9P2I0 782 aaKnown RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 GPN3Q9UHW5 284 aaPredicted RBP11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 TMCO1Q9UM00 188 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 DYRK1BQ9Y463 629 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 KCNE2Q9Y6J6 123 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 CNTRLQ7Z7A1 2325 aa11.31□□□□□ -0.6
SQSTM1-206ENST00000466342 A0A0J9YVX5 310 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 H7BY64 318 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 MAP2K7O14733 419 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 SRPX2O60687 465 aaPredicted RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 GLRA3O75311 464 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 STK16O75716 305 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 IGHEP01854 428 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 GFAPP14136 432 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 TSFMP43897 325 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 ALDH18A1P54886 795 aaKnown RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 SOX8P57073 446 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 CSNK1G2P78368 415 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 ZNF844Q08AG5 666 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 PFKFB4Q16877 469 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 NKAIN1Q4KMZ8 207 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 FBXO48Q5FWF7 155 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 TCTE1Q5JU00 501 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 C1orf189Q5VU69 101 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 YOD1Q5VVQ6 348 aaPredicted RBP11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 FBXO42Q6P3S6 717 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 LRRC70Q7Z2Q7 622 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 RAB43Q86YS6 212 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 TMEM151AQ8N4L1 468 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 ABHD11Q8NFV4 315 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 MYRIPQ8NFW9 859 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 SLC5A11Q8WWX8 675 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 ESAMQ96AP7 390 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 C14orf79Q96F83 325 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 FER1L6-AS2Q96M78 137 aa11.3□□□□□ -0.6
SQSTM1-206ENST00000466342 PRAP1Q96NZ9 151 aa11.3□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms