RNA–Protein interactions for RNA: ENST00000463487.1

COL9A3-204, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 760 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-204ENST00000463487 OR1D4P47884 311 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 NAGLUP54802 743 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 CDH13P55290 713 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 PKNOX1P55347 436 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 IFT88Q13099 833 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 CRTC2Q53ET0 693 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-204ENST00000463487 TMEM35AQ53FP2 167 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 UNC50Q53HI1 259 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 TNFAIP8L3Q5GJ75 292 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 INO80CQ6PI98 192 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-204ENST00000463487 GPRIN3Q6ZVF9 776 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 CHSY3Q70JA7 882 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 HOMEZQ8IX15 550 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 ARHGEF39Q8N4T4 335 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 OR52B6Q8NGF0 335 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 OR9A4Q8NGU2 314 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 MOCOSQ96EN8 888 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 CMTM7Q96FZ5 175 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 ZNF382Q96SR6 550 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 REXO4Q9GZR2 422 aaKnown RBP18.8■□□□□ 0.6
COL9A3-204ENST00000463487 SLC26A1Q9H2B4 701 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 ACBD3Q9H3P7 528 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 VIPAS39Q9H9C1 493 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 CLK4Q9HAZ1 481 aaKnown RBP18.8■□□□□ 0.6
COL9A3-204ENST00000463487 ZBTB26Q9HCK0 441 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 KCNK9Q9NPC2 374 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 MKKSQ9NPJ1 570 aaPredicted RBP18.8■□□□□ 0.6
COL9A3-204ENST00000463487 C14orf105Q9NVL8 296 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 TRPC4Q9UBN4 977 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 TRPS1Q9UHF7 1281 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 TCFL5Q9UL49 500 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 SNX6Q9UNH7 406 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 MAP4K5Q9Y4K4 846 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 SEC16AO15027 2179 aa18.8■□□□□ 0.6
COL9A3-204ENST00000463487 FOXS1O43638 330 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 TRIM13O60858 407 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 CREG1O75629 220 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 KLHL18O94889 574 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 ZNF888P0CJ79 500 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 CXADRP78310 365 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 TRAF3Q13114 568 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 DDX39BQ13838 428 aaKnown RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 PCLAFQ15004 111 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 ZRSR2Q15696 482 aaKnown RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 DEFB134Q4QY38 66 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 LCN10Q6JVE6 187 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 OR2L5Q8NG80 312 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 OR4F6Q8NGB9 312 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 CDK15Q96Q40 435 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 TRMOQ9BU70 441 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 ROGDIQ9GZN7 287 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 C12orf65Q9H3J6 166 aaKnown RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 ELOVL6Q9H5J4 265 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 COPS7BQ9H9Q2 264 aaPredicted RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 TMBIM4Q9HC24 238 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 SLC17A7Q9P2U7 560 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 IL17BQ9UHF5 180 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 RNF11Q9Y3C5 154 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 NAALAD2Q9Y3Q0 740 aa18.79■□□□□ 0.6
COL9A3-204ENST00000463487 MAP1BP46821 2468 aaKnown RBP18.79■□□□□ 0.6
COL9A3-204ENST00000463487 LRIT2A6NDA9 550 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 ERI3O43414 337 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 MED26O95402 600 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 CAPN1P07384 714 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 RAP1GDS1P52306 607 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 FRG2Q64ET8 278 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 MRPL14Q6P1L8 145 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 FRMD7Q6ZUT3 714 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 RAB43Q86YS6 212 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 C10orf107Q8IVU9 208 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 AFAP1L2Q8N4X5 818 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 OR2Y1Q8NGV0 311 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 HUS1BQ8NHY5 278 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 UTP15Q8TED0 518 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 ZNF473Q8WTR7 871 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 MIEF2Q96C03 454 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 VPS50Q96JG6 964 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 CATSPER2Q96P56 530 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 KCNC2Q96PR1 638 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 FRG2BQ96QU4 278 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 GSTO2Q9H4Y5 243 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 CPNE5Q9HCH3 593 aa18.78■□□□□ 0.6
COL9A3-204ENST00000463487 MRPS2Q9Y399 296 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 PTRH2Q9Y3E5 179 aaKnown RBP18.78■□□□□ 0.6
COL9A3-204ENST00000463487 FOXE1O00358 373 aaPredicted RBP18.77■□□□□ 0.6
COL9A3-204ENST00000463487 GALR3O60755 368 aaPredicted RBP18.77■□□□□ 0.6
COL9A3-204ENST00000463487 CRCPO75575 148 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 KRT6AP02538 564 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 KRT6BP04259 564 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 ENO1P06733 434 aaKnown RBP18.77■□□□□ 0.6
COL9A3-204ENST00000463487 CREB1P16220 341 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 TSPAN8P19075 237 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 IL10P22301 178 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 F8A1P23610 371 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 PTX3P26022 381 aaPredicted RBP18.77■□□□□ 0.6
COL9A3-204ENST00000463487 HMOX2P30519 316 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 KRT6CP48668 564 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 RAB8AP61006 207 aa18.77■□□□□ 0.6
COL9A3-204ENST00000463487 SRSF6Q13247 344 aaKnown RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 109.7 ms