RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SIKE1Q9BRV8 207 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 CCDC28BQ9BUN5 200 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SLC6A16Q9GZN6 736 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 MYLK2Q9H1R3 596 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SAR1AQ9NR31 198 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 SEMA5BQ9P283 1151 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 VPS29Q9UBQ0 182 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 BAIAP2L1Q9UHR4 511 aa10.48□□□□□ -0.73
SCN9A-205ENST00000454569 APOBEC2Q9Y235 224 aaKnown RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 POLR3HQ9Y535 204 aaPredicted RBP10.48□□□□□ -0.73
SCN9A-205ENST00000454569 LRIT2A6NDA9 550 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 C9JVG2 144 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PLPP1O14494 284 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 FCHO1O14526 889 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 RGS14O43566 566 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 HYAL3O43820 417 aaPredicted RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 SEC22BO75396 215 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 DCTN3O75935 186 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 RSL1D1O76021 490 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 KIAA0754O94854 1291 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 CPNE6O95741 557 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 EIF2S1P05198 315 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 EZRP15311 586 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 FOLR1P15328 257 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 LBPP18428 481 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 NCF2P19878 526 aaPredicted RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PRPH2P23942 346 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PIK3CBP42338 1070 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 RPS15AP62244 130 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 CSTF3Q12996 717 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 GPR19Q15760 415 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 IMPG1Q17R60 797 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 TOR1AIP1Q5JTV8 583 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 DEPDC1Q5TB30 811 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PRAMEF17Q5VTA0 474 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 IL23RQ5VWK5 629 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 C6orf89Q6UWU4 347 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ACAD11Q709F0 780 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PRSS41Q7RTY9 318 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ARHGAP22Q7Z5H3 698 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PLXDC1Q8IUK5 500 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 MCATQ8IVS2 390 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 SLITRK4Q8IW52 837 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 DEPDC4Q8N2C3 294 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 C1orf52Q8N6N3 182 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 CHTF18Q8WVB6 975 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 SLC13A3Q8WWT9 602 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 KLHL6Q8WZ60 621 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 EGLN2Q96KS0 407 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ZFYVE21Q9BQ24 234 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 EBPLQ9BY08 206 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 SPRTNQ9H040 489 aaPredicted RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 EPB41L1Q9H4G0 881 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ACTL8Q9H568 366 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 BRF2Q9HAW0 419 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 LRTM1Q9HBL6 345 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 C1orf109Q9NX04 203 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 PDP2Q9P2J9 529 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ANKMY1Q9P2S6 941 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 ZMIZ1Q9ULJ6 1067 aa10.47□□□□□ -0.73
SCN9A-205ENST00000454569 COPG1Q9Y678 874 aaKnown RBP10.47□□□□□ -0.73
SCN9A-205ENST00000454569 NPIPB8E9PQR5 432 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 H3BMH7 237 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 UBDO15205 165 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 NDUFS4O43181 175 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 EEDO75530 441 aaKnown RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 CLEC3AO75596 197 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 FKBP9O95302 570 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ZBTB11O95625 1053 aaPredicted RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 THRAP10827 490 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 G6PDP11413 515 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 BSGP35613 385 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 GRK3P35626 688 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 AHRP35869 848 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ZFP36L2P47974 494 aaKnown RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 DUSP3P51452 185 aaPredicted RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 RAB8AP61006 207 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 SPRED3Q2MJR0 410 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ADPRMQ3LIE5 342 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ATP6AP1LQ52LC2 224 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 KHDRBS2Q5VWX1 349 aaKnown RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ZNF793Q6ZN11 406 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 TRPM8Q7Z2W7 1104 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 PRSS42Q7Z5A4 293 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ASPGQ86U10 573 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 SLCO6A1Q86UG4 719 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ZFAND4Q86XD8 727 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 KIRREL3Q8IZU9 778 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 CHCHD4Q8N4Q1 142 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 ARHGEF39Q8N4T4 335 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 GBP7Q8N8V2 638 aaPredicted RBP10.46□□□□□ -0.74
SCN9A-205ENST00000454569 FNDC5Q8NAU1 212 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 DEFB124Q8NES8 71 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 OR9I1Q8NGQ6 314 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 CLHC1Q8NHS4 586 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 UCN3Q969E3 161 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 UBE2E3Q969T4 207 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 REPS1Q96D71 796 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 MS4A6EQ96DS6 147 aa10.46□□□□□ -0.74
SCN9A-205ENST00000454569 CMTM7Q96FZ5 175 aa10.46□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms