RNA–Protein interactions for RNA: ENST00000453046.5

SQSTM1-204, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 572 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-204ENST00000453046 CDC7O00311 574 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SOCS6O14544 535 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 KLF11O14901 512 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SLC16A5O15375 505 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SMIM24O75264 130 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 ENO2P09104 434 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 FBLP22087 321 aaKnown RBP17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 ALDH3A1P30838 453 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SOX8P57073 446 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 ABATP80404 500 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 TAP2Q03519 686 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 PRAMEF13Q5VWM6 474 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SBSNQ6UWP8 590 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 CYHR1Q6ZMK1 362 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 FRA10AC1Q70Z53 315 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 PAQR7Q86WK9 346 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 NUDCD3Q8IVD9 361 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SLC22A9Q8IVM8 553 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 PRSS58Q8IYP2 241 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 CSNK1A1LQ8N752 337 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 Q8NA96 180 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 LRRC8CQ8TDW0 803 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 MECRQ9BV79 373 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 SLC29A3Q9BZD2 475 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 ILKAPQ9H0C8 392 aaPredicted RBP17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 IKZF3Q9UKT9 509 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 CDC14AQ9UNH5 594 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 B3GNT3Q9Y2A9 372 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 HS3ST3B1Q9Y662 390 aa17.12■□□□□ 0.33
SQSTM1-204ENST00000453046 IGKV1-8A0A0C4DH67 115 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 VSTM2BA6NLU5 285 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 GFYI3L273 518 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 ALOX12BO75342 701 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 MED26O95402 600 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 ZGLP1P0C6A0 271 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 NEFHP12036 1026 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 EZRP15311 586 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 DNAJB13P59910 316 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 KLC1Q07866 573 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PPP1R3AQ16821 1122 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PRTGQ2VWP7 1150 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PLEKHN1Q494U1 663 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PRR30Q53SZ7 412 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 LIPMQ5VYY2 423 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 TTC19Q6DKK2 380 aaPredicted RBP17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 KIRREL2Q6UWL6 708 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 GPSM1Q86YR5 675 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 C10orf107Q8IVU9 208 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 STT3BQ8TCJ2 826 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 C10orf90Q96M02 699 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 OXSMQ9NWU1 459 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 OARD1Q9Y530 152 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PRRC2CQ9Y520 2896 aaKnown RBP17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 PCM1Q15154 2024 aa17.11■□□□□ 0.33
SQSTM1-204ENST00000453046 WDR91A4D1P6 747 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 CLEC18AA5D8T8 446 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 A8MT66 165 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 SUPT3HB4E1H0 165 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 TXNDC9O14530 226 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 DLX3O60479 287 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 TRIM13O60858 407 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 SUPT3HO75486 399 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 SERPINE1P05121 402 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 ANXA5P08758 320 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 MTHFD2P13995 350 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 BGNP21810 368 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 GRK2P25098 689 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 EMP3P54852 163 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 CHI3L2Q15782 390 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 HKDC1Q2TB90 917 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 FHL5Q5TD97 284 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 ATG16L1Q676U5 607 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 ZNF425Q6IV72 752 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 IGFL3Q6UXB1 125 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 CLEC18BQ6UXF7 455 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 PARP9Q8IXQ6 854 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 CLEC18CQ8NCF0 446 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 PDPRQ8NCN5 879 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 PPP1R14CQ8TAE6 165 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 MCOLN3Q8TDD5 553 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 EXT2Q93063 718 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 MMABQ96EY8 250 aaPredicted RBP17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 MANSC1Q9H8J5 431 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 CCDC177Q9NQR7 707 aaPredicted RBP17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 PSD3Q9NYI0 1048 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 C3orf18Q9UK00 162 aa17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 RUVBL1Q9Y265 456 aaKnown RBP17.1■□□□□ 0.33
SQSTM1-204ENST00000453046 STX16-NPEPL1H3BU86 382 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 H7BY64 318 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 UBXN8O00124 270 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 STX16O14662 325 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 HAT1O14929 419 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 KLK8O60259 260 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 AGFG2O95081 481 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 IMPA1P29218 277 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 CBX1P83916 185 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 CDKL1Q00532 357 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 SRSF1Q07955 248 aaKnown RBP eCLIP17.09■□□□□ 0.331e-6■■□□□ 13.1
SQSTM1-204ENST00000453046 TGFBIQ15582 683 aa17.09■□□□□ 0.33
SQSTM1-204ENST00000453046 VWA2Q5GFL6 755 aa17.09■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms