RNA–Protein interactions for RNA: ENST00000449223.3

RPS28-202, Transcript of ribosomal protein S28, humanhuman

TSL 2

Gene RPS28, Length 1,523 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-202ENST00000449223 C4orf47A7E2U8 309 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 DLL1O00548 723 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 CASC3O15234 703 aaKnown RBP18.37■□□□□ 0.53
RPS28-202ENST00000449223 MAP3K7O43318 606 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 BCKDHAP12694 445 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 NELFEP18615 380 aaKnown RBP18.37■□□□□ 0.53
RPS28-202ENST00000449223 GPX3P22352 226 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 TIA1P31483 386 aaKnown RBP eCLIP18.37■□□□□ 0.537e-13■■■■■ 30.1
RPS28-202ENST00000449223 PPM1FP49593 454 aaPredicted RBP18.37■□□□□ 0.53
RPS28-202ENST00000449223 STX1BP61266 288 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 ILKQ13418 452 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 FOXR1Q6PIV2 292 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 UBE3DQ7Z6J8 389 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 PIP4P1Q86T03 277 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 OR4N4Q8N0Y3 316 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 ARHGEF39Q8N4T4 335 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 OR2L5Q8NG80 312 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 GAL3ST3Q96A11 431 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 RGMAQ96B86 450 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 MARK4Q96L34 752 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 F2RL3Q96RI0 385 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 LHX9Q9NQ69 397 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 MCM8Q9UJA3 840 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 PLCL2Q9UPR0 1127 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 DLGAP4Q9Y2H0 992 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 POLR3HQ9Y535 204 aaPredicted RBP18.37■□□□□ 0.53
RPS28-202ENST00000449223 CAPN7Q9Y6W3 813 aa18.37■□□□□ 0.53
RPS28-202ENST00000449223 URADA6NGE7 173 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 D6RAR5 112 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 TXNDC9O14530 226 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 P2RX6O15547 441 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 HCRTR1O43613 425 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 SCELO95171 688 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 G6PDP11413 515 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 SDC1P18827 310 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 JAK1P23458 1154 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 BSGP35613 385 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 MLLT3P42568 568 aaPredicted RBP18.36■□□□□ 0.53
RPS28-202ENST00000449223 C21orf58P58505 322 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 KLF10Q13118 480 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 ABHD17CQ6PCB6 329 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 CYP20A1Q6UW02 462 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 PAGE2Q7Z2X7 111 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 TREML1Q86YW5 311 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 MCATQ8IVS2 390 aaKnown RBP18.36■□□□□ 0.53
RPS28-202ENST00000449223 MIER2Q8N344 545 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 KCNC2Q96PR1 638 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 GFM1Q96RP9 751 aaKnown RBP18.36■□□□□ 0.53
RPS28-202ENST00000449223 ZMYND15Q9H091 742 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 ACTL8Q9H568 366 aa18.36■□□□□ 0.53
RPS28-202ENST00000449223 DDX31Q9H8H2 851 aaKnown RBP18.36■□□□□ 0.53
RPS28-202ENST00000449223 ATXN7L1Q9ULK2 861 aaPredicted RBP18.36■□□□□ 0.53
RPS28-202ENST00000449223 PSMD12O00232 456 aaPredicted RBP18.35■□□□□ 0.53
RPS28-202ENST00000449223 MYO1DO94832 1006 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 SMIM10L1P0DMW3 83 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 PRDX6P30041 224 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 GSTM5P46439 218 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 TRA2AQ13595 282 aaKnown RBP eCLIP18.35■□□□□ 0.53
RPS28-202ENST00000449223 HERC3Q15034 1050 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 ZSCAN26Q16670 478 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 PRTGQ2VWP7 1150 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 TMEM214Q6NUQ4 689 aaKnown RBP18.35■□□□□ 0.53
RPS28-202ENST00000449223 SLITRK4Q8IW52 837 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.35■□□□□ 0.53
RPS28-202ENST00000449223 PROKR1Q8TCW9 393 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 SMIM10Q96HG1 83 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 TMEM74Q96NL1 305 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 QRFPRQ96P65 431 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 TBCDQ9BTW9 1192 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 SOHLH2Q9NX45 425 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 KLHL3Q9UH77 587 aa18.35■□□□□ 0.53
RPS28-202ENST00000449223 IGHV5-10-1A0A0J9YXX1 117 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 FITM1A5D6W6 292 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 C4orf51C9J302 202 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 H3BMH7 237 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 SAP18O00422 153 aaKnown RBP18.34■□□□□ 0.53
RPS28-202ENST00000449223 SH3BGRLO75368 114 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 SERPIND1P05546 499 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 PIK3R1P27986 724 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 TPP2P29144 1249 aaPredicted RBP18.34■□□□□ 0.53
RPS28-202ENST00000449223 RAP1GDS1P52306 607 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 LIMK1P53667 647 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 EMP3P54852 163 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 TGM3Q08188 693 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 TCTE1Q5JU00 501 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 OR4C11Q6IEV9 310 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 TRIM40Q6P9F5 258 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 YTHDF3Q7Z739 585 aaKnown RBP18.34■□□□□ 0.53
RPS28-202ENST00000449223 NUDT13Q86X67 352 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 LIX1Q8N485 282 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 CSNK1A1LQ8N752 337 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 NLNQ9BYT8 704 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 KLHL31Q9H511 634 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 PRDM7Q9NQW5 492 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 G3BP2Q9UN86 482 aaKnown RBP18.34■□□□□ 0.53
RPS28-202ENST00000449223 WBP11Q9Y2W2 641 aaKnown RBP18.34■□□□□ 0.53
RPS28-202ENST00000449223 SLC22A7Q9Y694 548 aa18.34■□□□□ 0.53
RPS28-202ENST00000449223 PCDH7O60245 1069 aa18.33■□□□□ 0.53
RPS28-202ENST00000449223 GDF9O60383 454 aa18.33■□□□□ 0.53
RPS28-202ENST00000449223 PRMT3O60678 531 aa18.33■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms