RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 RBMXL2O75526 392 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SYF2O95926 243 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 IGHV2-70P01814 119 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 LGALS2P05162 132 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CSN3P07498 182 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 FAM86B2P0C5J1 330 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 LINC00271P0C7V0 271 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SMIM10L2AP0DMW4 78 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SMIM10L2BP0DMW5 78 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SPP1P10451 314 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 ZNF23P17027 643 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CYP11B2P19099 503 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 ITIH1P19827 911 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CD22P20273 847 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TNFRSF8P28908 595 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 HOXD3P31249 432 aaPredicted RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 HSD17B3P37058 310 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NT5C2P49902 561 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 MFAP3P55082 362 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 DSC1Q08554 894 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 C17orf67Q0P5P2 114 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 WASHC5Q12768 1159 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NPRL3Q12980 569 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CBX3Q13185 183 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TNK1Q13470 666 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 OASLQ15646 514 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 LRRC23Q53EV4 343 aaPredicted RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 DDX59Q5T1V6 619 aaKnown RBP eCLIP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 GRTP1Q5TC63 336 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 ARHGEF16Q5VV41 709 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TYW3Q6IPR3 259 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 RAB12Q6IQ22 244 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TRNP1Q6NT89 227 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CASC4Q6P4E1 433 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SLC27A1Q6PCB7 646 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NHLRC1Q6VVB1 395 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 Q6ZTK2 550 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 PLEKHM3Q6ZWE6 761 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TMPRSS11FQ6ZWK6 438 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NUP54Q7Z3B4 507 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 GGNQ86UU5 652 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 LRRC43Q8N309 656 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 RYBPQ8N488 228 aaPredicted RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 DCLK2Q8N568 766 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TRIML1Q8N9V2 468 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 SUMF1Q8NBK3 374 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 OR5R1Q8NH85 324 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 RSPH1Q8WYR4 309 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NSMAFQ92636 917 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 PIGTQ969N2 578 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 OTUB1Q96FW1 271 aaPredicted RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 NLRP4Q96MN2 994 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 ZNF582Q96NG8 517 aaPredicted RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 MTERF1Q99551 399 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 FNDC11Q9BVV2 318 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 QTRT1Q9BXR0 403 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 S1PR5Q9H228 398 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TBC1D17Q9HA65 648 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 CDH20Q9HBT6 801 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 MYNNQ9NPC7 610 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 EXOC1Q9NV70 894 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 C1RLQ9NZP8 487 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TRPC4Q9UBN4 977 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 FBXL5Q9UKA1 691 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 AMDHD2Q9Y303 409 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 ABCB11O95342 1321 aa3.86□□□□□ -1.79
HMGB3-203ENST00000430118 MYO5AQ9Y4I1 1855 aaKnown RBP3.86□□□□□ -1.79
HMGB3-203ENST00000430118 TRIP12Q14669 1992 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 C13orf42A0A1B0GVH6 325 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RPS10-NUDT3A0A1W2PQS6 291 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 EME2A4GXA9 379 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 LILRA5A6NI73 299 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 ADAM10O14672 748 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 MEIS2O14770 477 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 EIF3DO15371 548 aaKnown RBP eCLIP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 AP5Z1O43299 807 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RGS14O43566 566 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PI15O43692 258 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 MTRF1O75570 445 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PRDM1O75626 825 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 STAM2O75886 525 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 SLC16A8O95907 504 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 CELA2AP08217 269 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 TMEM191BP0C7N4 346 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 C8orf89P0DMQ9 161 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 HSPD1P10809 573 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 EZRP15311 586 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 KELP23276 732 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 DNAJB1P25685 340 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 C21orf33P30042 268 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 CCND2P30279 289 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 GDF5P43026 501 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 IER3P46695 156 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RPL21P46778 160 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 RGS7P49802 495 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 SH3BGRP55822 239 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 KRTAP10-2P60368 255 aa3.85□□□□□ -1.79
HMGB3-203ENST00000430118 EEF1A2Q05639 463 aaKnown RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PNRC1Q12796 327 aaPredicted RBP3.85□□□□□ -1.79
HMGB3-203ENST00000430118 PLA2G7Q13093 441 aa3.85□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms