RNA–Protein interactions for RNA: ENST00000427724.6

TCOF1-204, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5

Gene TCOF1, Length 4,272 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-204ENST00000427724 RABL3Q5HYI8 236 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 NIPAL1Q6NVV3 410 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 GTF2H2CQ6P1K8 395 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 DTWD2Q8NBA8 298 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 OR2T12Q8NG77 320 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 EEF1AKMT1Q8WVE0 214 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 S100ZQ8WXG8 99 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 SEMA3GQ9NS98 782 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 NUDT4Q9NZJ9 180 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 PTGDR2Q9Y5Y4 395 aa10.27□□□□□ -0.76
TCOF1-204ENST00000427724 OXSR1O95747 527 aaPredicted RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 JUNP05412 331 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 GLULP15104 373 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 IL12AP29459 219 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 HMGCLP35914 325 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 EIF2DP41214 584 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 SGSHP51688 502 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MAZP56270 477 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 HERVK_113P63132 956 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MYBPC1Q00872 1141 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 HEPACAMQ14CZ8 416 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 PIGGQ5H8A4 983 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 DUS1LQ6P1R4 473 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 LILRA6Q6PI73 481 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 HSD11B1LQ7Z5J1 315 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 FAM98AQ8NCA5 519 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 SMRP1Q8NCR6 262 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ZHX1-C8orf76Q96EF9 292 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ERVK-6Q9BXR3 956 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 EHD1Q9H4M9 534 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MAU2Q9Y6X3 613 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ARFGEF1Q9Y6D6 1849 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 VILLO15195 856 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 AP1S2P56377 157 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TRAP1Q12931 704 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 HTR4Q13639 388 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 DEFB134Q4QY38 66 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 SHISA6Q6ZSJ9 500 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MAVSQ7Z434 540 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ANKRD46Q86W74 232 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 OR13H1Q8NG92 308 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 OR10Q1Q8NGQ4 319 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 PNPT1Q8TCS8 783 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TMEM74Q96NL1 305 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 DGAT2Q96PD7 388 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 EFCAB11Q9BUY7 163 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TMEM168Q9H0V1 697 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ZNF696Q9H7X3 374 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 LRTM1Q9HBL6 345 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ADGRE2Q9UHX3 823 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 CLEC4EQ9ULY5 219 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TAF1LQ8IZX4 1826 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 CDC40O60508 579 aaKnown RBP eCLIP10.27□□□□□ -0.779e-7■■■□□ 18.5
TCOF1-204ENST00000427724 TSPAN9O75954 239 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ALPPP05187 535 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 AQP1P29972 269 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 SMAD2Q15796 467 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 RAB41Q5JT25 222 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TOR1AIP1Q5JTV8 583 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 C6orf132Q5T0Z8 1188 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 TMIGD1Q6UXZ0 262 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MCFD2Q8NI22 146 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 WFDC5Q8TCV5 224 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 LRRC58Q96CX6 371 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MRGPRX1Q96LB2 322 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 MKRN2Q9H000 416 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 SOX17Q9H6I2 414 aaPredicted RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 EPS8L2Q9H6S3 715 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 GPN2Q9H9Y4 310 aaPredicted RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 RPRD1BQ9NQG5 326 aaKnown RBP10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ANGPT4Q9Y264 503 aa10.27□□□□□ -0.77
TCOF1-204ENST00000427724 ARPC2O15144 300 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 HTRA2O43464 458 aaPredicted RBP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 DENRO43583 198 aaKnown RBP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 SLC28A2O43868 658 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 RPLP0P05388 317 aaKnown RBP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 GPIP06744 558 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 CDH1P12830 882 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 BMP8BP34820 402 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 ANKDD1AQ495B1 522 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 LUZP2Q86TE4 346 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 COMMD2Q86X83 199 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 FAM20CQ8IXL6 584 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 MINDY1Q8N5J2 469 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 TTLQ8NG68 377 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 GPR151Q8TDV0 419 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 KHSRPQ92945 711 aaKnown RBP eCLIP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 FBXL20Q96IG2 436 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 SMIM14Q96QK8 99 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 PLA2G2FQ9BZM2 168 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 KRCC1Q9NPI7 259 aaPredicted RBP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 SACM1LQ9NTJ5 587 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 C3orf18Q9UK00 162 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 SOBPA7XYQ1 873 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 G3V2T6 193 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 RFXANKO14593 260 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 HOXC11O43248 304 aaPredicted RBP10.26□□□□□ -0.77
TCOF1-204ENST00000427724 TBX1O43435 398 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 TNFRSF21O75509 655 aa10.26□□□□□ -0.77
TCOF1-204ENST00000427724 GABBR2O75899 941 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms