RNA–Protein interactions for RNA: ENST00000413872.6

PHRF1-202, Transcript of PHD and ring finger domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene PHRF1, Length 5,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHRF1-202ENST00000413872 NPIPA5E9PKD4 350 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 DFNA5O60443 496 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 CREG1O75629 220 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 TIA1P31483 386 aaKnown RBP eCLIP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF267Q14586 743 aaPredicted RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 LASP1Q14847 261 aaKnown RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 ZFAND4Q86XD8 727 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 CHST4Q8NCG5 386 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 DAZLQ92904 295 aaKnown RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 FATE1Q969F0 183 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 CNDP2Q96KP4 475 aaKnown RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 RNF121Q9H920 327 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 RC3H2Q9HBD1 1191 aaKnown RBP16.69■□□□□ 0.26
PHRF1-202ENST00000413872 NPIPA1Q9UND3 350 aa16.69■□□□□ 0.26
PHRF1-202ENST00000413872 ITGB1P05556 798 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 HOXC13P31276 330 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MARCH8Q5T0T0 291 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 PLET1Q6UQ28 207 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 SCD5Q86SK9 330 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 SYVN1Q86TM6 617 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 DIRAS2Q96HU8 199 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 CHCHD6Q9BRQ6 235 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 LGR4Q9BXB1 951 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 XKR8Q9H6D3 395 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 C1orf226A1L170 272 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 FAM170BA6NMN3 283 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 EI24O14681 340 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 FAM189A2Q15884 450 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 PRPF38BQ5VTL8 546 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MRPL43Q8N983 215 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 SORCS1Q8WY21 1168 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 ISG20Q96AZ6 181 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 TCHHQ07283 1943 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 TLR4O00206 839 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MID1O15344 667 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 RPLP0P05388 317 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 FDXRP22570 491 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 KCNC4Q03721 635 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 RBBP4Q09028 425 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MANEALQ5VSG8 457 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 CD180Q99467 661 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 UCK2Q9BZX2 261 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 LIPT1Q9Y234 373 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 NOBOXO60393 691 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 KLHL18O94889 574 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 HNRNPA2B1P22626 353 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 ACADVLP49748 655 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MERTKQ12866 999 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 FADDQ13158 208 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 RBM48Q5RL73 367 aaKnown RBP16.68■□□□□ 0.26
PHRF1-202ENST00000413872 PSAPL1Q6NUJ1 521 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 MEIOBQ8N635 442 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 PROKR2Q8NFJ6 384 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 CANT1Q8WVQ1 401 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 PKP4Q99569 1192 aa16.68■□□□□ 0.26
PHRF1-202ENST00000413872 K7ERQ8 282 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 SNX4O95219 450 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 STATHP02808 62 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 OPN1SWP03999 348 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 NTHL1P78549 312 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 GRIK2Q13002 908 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 HTR3DQ70Z44 454 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 ZSCAN1Q8NBB4 408 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 IL21RQ9HBE5 538 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 WASH4PA8MWX3 477 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 GATBO75879 557 aaKnown RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 TBPL1P62380 186 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 HAVCR1Q96D42 359 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 PTCHD1Q96NR3 888 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 FAM240BA0A1B0GVZ2 78 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 AHCYL1O43865 530 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 PLOD3O60568 738 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 C8orf89P0DMQ9 161 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 DRD2P14416 443 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 BPIP17213 487 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 TXNL4AP83876 142 aaKnown RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 CCINQ13939 588 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 NLGN3Q9NZ94 848 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 E7ENX8 843 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 TYROBPO43914 113 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 FHP07954 510 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 FBLP22087 321 aaKnown RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 DEFB103AP81534 67 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 VLDLRP98155 873 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 QSOX2Q6ZRP7 698 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 PLD6Q8N2A8 252 aaKnown RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 NPWQ8N729 165 aa16.67■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF317Q96PQ6 595 aaPredicted RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF717Q9BY31 904 aaPredicted RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 POLR2J2Q9GZM3 115 aaKnown RBP16.67■□□□□ 0.26
PHRF1-202ENST00000413872 ITGA10O75578 1167 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 FGF3P11487 239 aaPredicted RBP16.66■□□□□ 0.26
PHRF1-202ENST00000413872 ZNF20P17024 532 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 XRCC1P18887 633 aaPredicted RBP16.66■□□□□ 0.26
PHRF1-202ENST00000413872 AGTR2P50052 363 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 RAB28P51157 221 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 ARHGDIBP52566 201 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 HYAL2Q12891 473 aa16.66■□□□□ 0.26
PHRF1-202ENST00000413872 CRTC2Q53ET0 693 aaPredicted RBP16.66■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms