RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 TMEM205Q6UW68 189 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TRIM46Q7Z4K8 759 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TCEANCQ8N8B7 351 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 NLGN2Q8NFZ4 835 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 COL21A1Q96P44 957 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 PTPN18Q99952 460 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 WRAP53Q9BUR4 548 aaKnown RBP12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 MS4A12Q9NXJ0 267 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 TIMM22Q9Y584 194 aa12.95□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTBP60709 375 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ACTG1P63261 375 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 DAG1Q14118 895 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NFATC4Q14934 902 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NLRP8Q86W28 1048 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ASB9Q96DX5 294 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 OR4K3Q96R72 315 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ABRACLQ9P1F3 81 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 EXOSC1Q9Y3B2 195 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SDK1Q7Z5N4 2213 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 DGKGP49619 791 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 IDH3AP50213 366 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 CSNK2A1P68400 391 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NOMO3P69849 1222 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC10A1Q14973 349 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NOMO1Q15155 1222 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 DECR1Q16698 335 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 CSNK2A3Q8NEV1 391 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ZDHHC12Q96GR4 267 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SLA2Q9H6Q3 261 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 HAO2Q9NYQ3 351 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TAS2R8Q9NYW2 309 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TPSB2P20231 275 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 IGFBP4P22692 258 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TPSAB1Q15661 275 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TMEM53Q6P2H8 277 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 MTERF1Q99551 399 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 B3GNT2Q9NY97 397 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 EPHA6Q9UF33 1036 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SRRDQ9UH36 339 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF638Q14966 1978 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 H0Y8G0 127 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 BACE1P56817 501 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 IRF5Q13568 498 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 AADACL2Q6P093 401 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 RASGRP3Q8IV61 690 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 OR5B17Q8NGF7 314 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 RNF128Q8TEB7 428 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM122AQ96E09 287 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 A0A1W2PQ67 120 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 A6NHS1 94 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 IRF6O14896 467 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 RFWD3Q6PCD5 774 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 KANSL1Q7Z3B3 1105 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 OR4D6Q8NGJ1 314 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 URM1Q9BTM9 101 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NUSAP1Q9BXS6 441 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 CHRNA6Q15825 494 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PSRC1Q6PGN9 363 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 CMTM1Q8IZ96 169 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SLC35F5Q8WV83 523 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PPIL3Q9H2H8 161 aaKnown RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TCEAL2Q9H3H9 227 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 MOB1AQ9H8S9 216 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 KCNIP2Q9NS61 270 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 ABCB8Q9NUT2 735 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 FAM86C1Q9NVL1 165 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 IGSF9Q9P2J2 1179 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 UGGT1Q9NYU2 1555 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PRDM15P57071 1507 aaPredicted RBP12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 LRRC7Q96NW7 1537 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PTPRJQ12913 1337 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SEC14L6B5MCN3 397 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NPHS1O60500 1241 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 SPATS1Q496A3 300 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 CARM1Q86X55 608 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 NTAN1Q96AB6 310 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 GPR21Q99679 349 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PCDHGA7Q9Y5G6 932 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 D6RAR5 112 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 AGXTP21549 392 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 HOXA9P31269 272 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 TAS2R31P59538 309 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 GSTM4Q03013 218 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 RSU1Q15404 277 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 HSFY1Q96LI6 401 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 STUB1Q9UNE7 303 aa12.94□□□□□ -0.34
CCDC88A-204ENST00000413716 PAGE1O75459 146 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CD97P48960 835 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 THBS3P49746 956 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PLA2G16P53816 162 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 WNT3AP56704 352 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 GAD2Q05329 585 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 PGM5Q15124 567 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 INAVAQ3KP66 663 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 MFSD5Q6N075 450 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF705AQ6ZN79 300 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ANKK1Q8NFD2 765 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 SNAPC3Q92966 411 aa12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 ZNF641Q96N77 438 aaPredicted RBP12.93□□□□□ -0.34
CCDC88A-204ENST00000413716 CPXM1Q96SM3 734 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms