RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 WWOXQ9NZC7 414 aa17.98■□□□□ 0.47
SF3A1-202ENST00000411423 UBXN8O00124 270 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CHST10O43529 356 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 SEC24DO94855 1032 aaPredicted RBP17.97■□□□□ 0.47
SF3A1-202ENST00000411423 TFEBP19484 476 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CXCR2P25025 360 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 AGTR2P50052 363 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 HERC3Q15034 1050 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 TOR1AIP1Q5JTV8 583 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 MFSD4BQ5TF39 518 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 SULT1C3Q6IMI6 304 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 RAPH1Q70E73 1250 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CPEB2Q7Z5Q1 589 aaKnown RBP17.97■□□□□ 0.47
SF3A1-202ENST00000411423 ANKRD37Q7Z713 158 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 RELL1Q8IUW5 271 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 KBTBD2Q8IY47 623 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 ZADH2Q8N4Q0 377 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CISD2Q8N5K1 135 aaKnown RBP17.97■□□□□ 0.47
SF3A1-202ENST00000411423 SIRT6Q8N6T7 355 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CATSPER1Q8NEC5 780 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 IFT81Q8WYA0 676 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 DNAJC11Q9NVH1 559 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 CD274Q9NZQ7 290 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 PTGFRNQ9P2B2 879 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 COPG2Q9UBF2 871 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 ZNF490Q9ULM2 529 aaPredicted RBP17.97■□□□□ 0.47
SF3A1-202ENST00000411423 RNF112Q9ULX5 631 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 PCDHGA10Q9Y5H3 936 aa17.97■□□□□ 0.47
SF3A1-202ENST00000411423 SERPINA7P05543 415 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 C2P06681 752 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 MTHFD2P13995 350 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 GNAZP19086 355 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 HNRNPH1P31943 449 aaKnown RBP17.96■□□□□ 0.47
SF3A1-202ENST00000411423 RGS1Q08116 209 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 MFAP5Q13361 173 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 ISLR2Q6UXK2 745 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 TCAIMQ8N3R3 496 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 PPP4R1Q8TF05 950 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 VPS50Q96JG6 964 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 FUT8Q9BYC5 575 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 ACSS3Q9H6R3 686 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 SNX15Q9NRS6 342 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 RIC8BQ9NVN3 520 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 ASF1BQ9NVP2 202 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 PLA2G3Q9NZ20 509 aa17.96■□□□□ 0.47
SF3A1-202ENST00000411423 A0A0G2JN53 185 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 TCP11X1B4DZS4 312 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 FAM227AF5H4B4 570 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 KLHL41O60662 606 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 STK16O75716 305 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 ACSL3O95573 720 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 ALDOAP04075 364 aaKnown RBP17.95■□□□□ 0.46
SF3A1-202ENST00000411423 SERPINA6P08185 405 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 LTA4HP09960 611 aaKnown RBP17.95■□□□□ 0.46
SF3A1-202ENST00000411423 CTAGE8P0CG41 777 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 CRABP2P29373 138 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 MRPL49Q13405 166 aaKnown RBP17.95■□□□□ 0.46
SF3A1-202ENST00000411423 DOC2AQ14183 400 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 UAP1Q16222 522 aaPredicted RBP17.95■□□□□ 0.46
SF3A1-202ENST00000411423 CDKL4Q5MAI5 379 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 CTAGE4Q8IX94 777 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 TBC1D19Q8N5T2 526 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 TRPV3Q8NET8 790 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 TM9SF4Q92544 642 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 WDR34Q96EX3 536 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 ILKAPQ9H0C8 392 aaPredicted RBP17.95■□□□□ 0.46
SF3A1-202ENST00000411423 GPRC5BQ9NZH0 403 aa17.95■□□□□ 0.46
SF3A1-202ENST00000411423 CCNT2O60583 730 aaKnown RBP17.94■□□□□ 0.46
SF3A1-202ENST00000411423 KERAO60938 352 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 F10P00742 488 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 FHP07954 510 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 BTG2P78543 158 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 TMIGD1Q6UXZ0 262 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 ABHD13Q7L211 337 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 TBC1D1Q86TI0 1168 aaPredicted RBP17.94■□□□□ 0.46
SF3A1-202ENST00000411423 IQCKQ8N0W5 287 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 CA13Q8N1Q1 262 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 PLD6Q8N2A8 252 aaKnown RBP17.94■□□□□ 0.46
SF3A1-202ENST00000411423 EFCAB3Q8N7B9 438 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 SNX31Q8N9S9 440 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 GALNT11Q8NCW6 608 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 LRRN4CLQ8ND94 238 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 PLPP5Q8NEB5 264 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 DNAJB14Q8TBM8 379 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 STAG3L4Q8TBR4 150 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 METTL21AQ8WXB1 218 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 TBC1D20Q96BZ9 403 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 MS4A6EQ96DS6 147 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 GPR78Q96P69 363 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 OR1F2PQ96R84 312 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 LMF1Q96S06 567 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 TUBB6Q9BUF5 446 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 CD244Q9BZW8 370 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 NMRAL1Q9HBL8 299 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 NUDT4Q9NZJ9 180 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 CPAMD8Q8IZJ3 1885 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 SCN2AQ99250 2005 aa17.94■□□□□ 0.46
SF3A1-202ENST00000411423 SETXQ7Z333 2677 aaKnown RBP17.93■□□□□ 0.46
SF3A1-202ENST00000411423 LRIT2A6NDA9 550 aa17.93■□□□□ 0.46
SF3A1-202ENST00000411423 LRRC14BA6NHZ5 514 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms