RNA–Protein interactions for RNA: ENST00000410093.5

LIMS1-205, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 1,526 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-205ENST00000410093 PLA2G15Q8NCC3 412 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 C11orf65Q8NCR3 313 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 OR4K1Q8NGD4 311 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 ZFP90Q8TF47 636 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 C16orf78Q8WTQ4 265 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 GFM2Q969S9 779 aaKnown RBP13.03□□□□□ -0.32
LIMS1-205ENST00000410093 PPCDCQ96CD2 204 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 MYADMQ96S97 322 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 PLA2G2FQ9BZM2 168 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 MVB12BQ9H7P6 319 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 ADPRHL2Q9NX46 363 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 BLOC1S6Q9UL45 172 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 HEBP2Q9Y5Z4 205 aa13.03□□□□□ -0.32
LIMS1-205ENST00000410093 NUMA1Q14980 2115 aa13.02□□□□□ -0.32
LIMS1-205ENST00000410093 KRT87PA6NCN2 255 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 PLK4O00444 970 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 PLRG1O43660 514 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 E2F6O75461 281 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 CPSF4O95639 269 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 DNTTP04053 509 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 ATP6V1B1P15313 513 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 MAGEA8P43361 318 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 ROR2Q01974 943 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 DYNC1I2Q13409 638 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 HKDC1Q2TB90 917 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TMEM259Q4ZIN3 620 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TMEM214Q6NUQ4 689 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 B3GNT6Q6ZMB0 384 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 ZDHHC21Q8IVQ6 265 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 ZC3H7AQ8IWR0 971 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 ZNF786Q8N393 782 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TBC1D19Q8N5T2 526 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TP53I13Q8NBR0 393 aaPredicted RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 OR4A15Q8NGL6 344 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 FOXJ1Q92949 421 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 SH3KBP1Q96B97 665 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 CNDP2Q96KP4 475 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TUBA1CQ9BQE3 449 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TRIM4Q9C037 500 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 RBM38Q9H0Z9 239 aaKnown RBP13.02□□□□□ -0.33
LIMS1-205ENST00000410093 CHST8Q9H2A9 424 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TMEM38AQ9H6F2 299 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TRPV5Q9NQA5 729 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 SH3BP4Q9P0V3 963 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 FZD4Q9ULV1 537 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 SLC17A4Q9Y2C5 497 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 TMEM98Q9Y2Y6 226 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 HSPE1-MOB4S4R3N1 261 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 V9GYQ6 96 aa13.02□□□□□ -0.33
LIMS1-205ENST00000410093 SLC16A6O15403 523 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 NOBOXO60393 691 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 SNAP29O95721 258 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 SEMG1P04279 462 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 FABP3P05413 133 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 DNAJA1P31689 397 aaKnown RBP13.01□□□□□ -0.33
LIMS1-205ENST00000410093 SOX11P35716 441 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 KIR2DL1P43626 348 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-205ENST00000410093 GALK1P51570 392 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 ABATP80404 500 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 REEP5Q00765 189 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 C2orf80Q0P641 193 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 TSTA3Q13630 321 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-205ENST00000410093 HEPACAMQ14CZ8 416 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 IRF4Q15306 451 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 RGNQ15493 299 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 OTUD3Q5T2D3 398 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-205ENST00000410093 DEPDC1Q5TB30 811 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 OR2T5Q6IEZ7 315 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 USP30Q70CQ3 517 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 ARMCX6Q7L4S7 300 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 THAP5Q7Z6K1 395 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 SLC9B2Q86UD5 537 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 C8orf59Q8N0T1 100 aaPredicted RBP13.01□□□□□ -0.33
LIMS1-205ENST00000410093 RNF175Q8N4F7 328 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 DENND6BQ8NEG7 585 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 GPR156Q8NFN8 814 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 OR52N2Q8NGI0 321 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 OR5AR1Q8NGP9 310 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 OR2T29Q8NH02 315 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 CDC26Q8NHZ8 85 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 CHFRQ96EP1 664 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 KXD1Q9BQD3 176 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 GRIP2Q9C0E4 1043 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 PCDHGB5Q9Y5G0 923 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 AK5Q9Y6K8 562 aa13.01□□□□□ -0.33
LIMS1-205ENST00000410093 CACNB4O00305 520 aaPredicted RBP13□□□□□ -0.33
LIMS1-205ENST00000410093 CAPN5O15484 640 aaPredicted RBP13□□□□□ -0.33
LIMS1-205ENST00000410093 UGT2B11O75310 529 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 CLEC3AO75596 197 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 TGFB1P01137 390 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 ASGR2P07307 311 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 ITGAMP11215 1152 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 DCTP40126 519 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 HLCSP50747 726 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 GABARAPL2P60520 117 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 ZNF630Q2M218 657 aaPredicted RBP13□□□□□ -0.33
LIMS1-205ENST00000410093 TMEM35AQ53FP2 167 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 PYCR3Q53H96 274 aa13□□□□□ -0.33
LIMS1-205ENST00000410093 KHDRBS2Q5VWX1 349 aaKnown RBP13□□□□□ -0.33
LIMS1-205ENST00000410093 RBM44Q6ZP01 1051 aaKnown RBP13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms