RNA–Protein interactions for RNA: ENST00000409915.8

SF3B1-202, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2 BASIC

Gene SF3B1, Length 600 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-202ENST00000409915 CUL1Q13616 776 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 FRG1Q14331 258 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GNA13Q14344 377 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SQLEQ14534 574 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF234Q14588 700 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 NPTX1Q15818 432 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 KCNJ8Q15842 424 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SLC18A3Q16572 532 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 LPAL2Q16609 132 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CA9Q16790 459 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SMTNL2Q2TAL5 461 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 KRT71Q3SY84 523 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 FBXO43Q4G163 708 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 C19orf54Q5BKX5 351 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CRB2Q5IJ48 1285 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 BRMS1LQ5PSV4 323 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 RABGAP1LQ5R372 815 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CD276Q5ZPR3 534 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ANKRD34AQ69YU3 496 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 TXNRD3NBQ6F5E7 133 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 HEPHL1Q6MZM0 1159 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 METTL2BQ6P1Q9 378 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CORO6Q6QEF8 472 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 MFSD7Q6UXD7 560 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SERPINA13PQ6UXR4 307 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 LRRC74BQ6ZQY2 392 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 PRR23CQ6ZRP0 262 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 Q6ZS46 218 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CYP4V2Q6ZWL3 525 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 USP43Q70EL4 1123 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 KCTD9Q7L273 389 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ARCQ7LC44 396 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 RRM2BQ7LG56 351 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 STRADAQ7RTN6 431 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ZC3HAV1Q7Z2W4 902 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 DCP2Q8IU60 420 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CLVS1Q8IUQ0 354 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 KLHL7Q8IXQ5 586 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GSPT2Q8IYD1 628 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SLC38A6Q8IZM9 456 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 APCDD1Q8J025 514 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SPEM1Q8N4L4 309 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 POU5F2Q8N7G0 328 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 MINDY2Q8NBR6 621 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 NETO2Q8NC67 525 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 PIK3C3Q8NEB9 887 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 FAM46DQ8NEK8 389 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SPATA4Q8NEY3 305 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 MDGA1Q8NFP4 955 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 TSTD1Q8NFU3 115 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CADM4Q8NFZ8 388 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 OR10Z1Q8NGY1 313 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ZNF564Q8TBZ8 553 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 AGR3Q8TD06 166 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GIPC3Q8TF64 312 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ABHD5Q8WTS1 349 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 FBLIM1Q8WUP2 373 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SEC14L1Q92503 715 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ATOH1Q92858 354 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 PGM2Q96G03 612 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 METTL2AQ96IZ6 378 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 VCPIP1Q96JH7 1222 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 LMLNQ96KR4 655 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SECISBP2Q96T21 854 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 DDX50Q9BQ39 737 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 CNPY3Q9BT09 278 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 LRRC1Q9BTT6 524 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 TBCDQ9BTW9 1192 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SNRNP25Q9BV90 132 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SPATA5L1Q9BVQ7 753 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 TRIM31Q9BZY9 425 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 OR10A5Q9H207 317 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 EHD1Q9H4M9 534 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 C10orf88Q9H8K7 445 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 AKTIPQ9H8T0 292 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 NHEJ1Q9H9Q4 299 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GPR35Q9HC97 309 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SAR1AQ9NR31 198 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 PARVAQ9NVD7 372 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 WSB2Q9NYS7 404 aaPredicted RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SPASTQ9UBP0 616 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SLC7A8Q9UHI5 535 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 DUSP13Q9UII6 198 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GNPTGQ9UJJ9 305 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 ANAPC7Q9UJX3 599 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 MMP17Q9ULZ9 603 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 SLC8A2Q9UPR5 921 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 NEU3Q9UQ49 428 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 OSGIN2Q9Y236 505 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 REXO2Q9Y3B8 237 aaKnown RBP4.41□□□□□ -1.7
SF3B1-202ENST00000409915 USP34Q70CQ2 3546 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 GPR179Q6PRD1 2367 aa4.41□□□□□ -1.7
SF3B1-202ENST00000409915 A0A0D9SEW6 157 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 A0A0U1RQJ8 604 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 TEX51A0A1B0GUA7 166 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 A0A1W2PQF6 199 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 MACROD2A1Z1Q3 448 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 AGAP5A6NIR3 686 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 SLC9B1P1A6NJY1 282 aa4.4□□□□□ -1.71
SF3B1-202ENST00000409915 A6NL46 340 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms