RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 CBLBQ13191 982 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 DECR1Q16698 335 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TMPPEQ6ZT21 453 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NOA1Q8NC60 698 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 OR14L1PQ8NHC6 308 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 SEMA4DQ92854 862 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CAVIN3Q969G5 261 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 POP5Q969H6 163 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 C1orf74Q96LT6 269 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TAAR9Q96RI9 348 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF471Q9BX82 626 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ALG9Q9H6U8 611 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MKKSQ9NPJ1 570 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 SEMA4BQ9NPR2 832 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NXT1Q9UKK6 140 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CAMK2AQ9UQM7 478 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MRASO14807 208 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 VILLO15195 856 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MFSD11O43934 449 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TGM6O95932 706 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PFKFB4Q16877 469 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 LCTLQ6UWM7 567 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF621Q6ZSS3 439 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 WDR53Q7Z5U6 358 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 HIST2H2ABQ8IUE6 130 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 GALNT12Q8IXK2 581 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 KATNAL2Q8IYT4 538 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TBC1D21Q8IYX1 336 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CSNK1A1LQ8N752 337 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 OR14K1Q8NGZ2 314 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 POC1BQ8TC44 478 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 C12orf43Q96C57 262 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 RRNAD1Q96FB5 475 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NSMCE3Q96MG7 304 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CHRDQ9H2X0 955 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TAAR2Q9P1P5 351 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 IKZF3Q9UKT9 509 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 MAB21L2Q9Y586 359 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PRSS38A1L453 326 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 OR6C70A6NIJ9 312 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 SCDO00767 359 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 FFAR3O14843 346 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PLD2O14939 933 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 GPR42O15529 346 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 HCRTO43612 131 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PCDHGA12O60330 932 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PNPP00491 289 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 S100A3P33764 101 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CAPZA1P52907 286 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 NFATC3Q12968 1075 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CDKL4Q5MAI5 379 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 FHL5Q5TD97 284 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 LINC00696Q6ZRV3 163 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 INO80EQ8NBZ0 244 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 IPCEF1Q8WWN9 437 aaPredicted RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 RHBDF1Q96CC6 855 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 DIRAS2Q96HU8 199 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 CDRT15Q96T59 188 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PELOQ9BRX2 385 aaKnown RBP7.06□□□□□ -1.28
SCN9A-202ENST00000409435 LRRN3Q9H3W5 708 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 SLC24A2Q9UI40 661 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 PCDHB10Q9UN67 800 aa7.06□□□□□ -1.28
SCN9A-202ENST00000409435 TBX10O75333 385 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 AP2A2O94973 939 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 RLN2P04090 185 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 HGFP14210 728 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 S100PP25815 95 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 MNDAP41218 407 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PRKAA2P54646 552 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CDH15P55291 814 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 EEFSECP57772 596 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PPP2R2BQ00005 443 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GRIK2Q13002 908 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GBX1Q14549 363 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 IRF4Q15306 451 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CPSF6Q16630 551 aaKnown RBP eCLIP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NLGN4XQ8N0W4 816 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NLGN4YQ8NFZ3 816 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 FGF11Q92914 225 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 FCRL3Q96P31 734 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CTRCQ99895 268 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 TM9SF3Q9HD45 589 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 WASH6PQ9NQA3 447 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PRSS16Q9NQE7 514 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 LHX6Q9UPM6 363 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ENTPD2Q9Y5L3 495 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A9O60656 530 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 PABPC4LP0CB38 370 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A6P19224 532 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A4P22310 534 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 NR4A1P22736 598 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ATP5F1P24539 256 aaPredicted RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A3P35503 534 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UGT1A5P35504 534 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 CCR5P51681 352 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 UBE2NP61088 152 aaKnown RBP7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GSTM4Q03013 218 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 RAET1LQ5VY80 246 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 GPR155Q7Z3F1 870 aa7.05□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF567Q8N184 647 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms