RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 LFNGQ8NES3 379 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 OR51J1Q9H342 316 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 POT1Q9NUX5 634 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PCM1Q15154 2024 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 MTMR11A4FU01 709 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 C5orf60A6NFR6 353 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SPP1P10451 314 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CHRNA4P43681 627 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 DPY19L2P1Q6NXN4 242 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TEX261Q6UWH6 196 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 HFE2Q6ZVN8 426 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 KCTD20Q7Z5Y7 419 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 LACC1Q8IV20 430 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZSCAN4Q8NAM6 433 aaPredicted RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 OR13J1Q8NGT2 312 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SPATA20Q8TB22 786 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TMEM41AQ96HV5 264 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 XRN2Q9H0D6 950 aaKnown RBP eCLIP8.49□□□□□ -1.05
LIG3-202ENST00000378526 ASH2LQ9UBL3 628 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 U3KQ87 197 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PCDH8O95206 1070 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FBLN1P23142 703 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TUBP50607 506 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ARL6IP1Q15041 203 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 IQCJQ1A5X6 159 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZNF791Q3KP31 576 aaPredicted RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 CCNJQ5T5M9 372 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SYNE4Q8N205 404 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 BEND7Q8N7W2 519 aaPredicted RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 HLA-CQ95604 372 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ARSGQ96EG1 525 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RNF170Q96K19 258 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CD180Q99467 661 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 FAM83CQ9BQN1 747 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 URM1Q9BTM9 101 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 PIGMQ9H3S5 423 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ERVK13-1Q9NX77 482 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 VWA7Q9Y334 891 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SOBPA7XYQ1 873 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 USP17L10C9JJH3 530 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 CD3GP09693 182 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 AOC1P19801 751 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 NDUFA6P56556 154 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 NTRK3Q16288 839 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 INAVAQ3KP66 663 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 SLC35F1Q5T1Q4 408 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 TRMT10BQ6PF06 316 aaKnown RBP8.49□□□□□ -1.05
LIG3-202ENST00000378526 ERMP1Q7Z2K6 904 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 MFSD6LQ8IWD5 586 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 NXPE1Q8N323 547 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 XAGE5Q8WWM1 108 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ZNF251Q9BRH9 671 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 ASB8Q9H765 288 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RXFP3Q9NSD7 469 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 RNF146Q9NTX7 359 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 C14orf119Q9NWQ9 140 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 PCDHB7Q9Y5E2 793 aa8.49□□□□□ -1.05
LIG3-202ENST00000378526 LOXHD1Q8IVV2 1947 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 DOCK9Q9BZ29 2069 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TREHO43280 583 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 FGF1P05230 155 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 H1F0P07305 194 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 ATP5A1P25705 553 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 MMP12P39900 470 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 IL23RQ5VWK5 629 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SUMF1Q8NBK3 374 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 NANPQ8TBE9 248 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SLC39A13Q96H72 371 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TXNDC15Q96J42 360 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SLC17A7Q9P2U7 560 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 USP6P35125 1406 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TMEM72A0PK05 275 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 DUXAA6NLW8 204 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 SEC14L5O43304 696 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 LYPLA1O75608 230 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 TGFB1P01137 390 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 POU2F1P14859 743 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 MPSTP25325 297 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 GKP32189 559 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 HSD11B2P80365 405 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 CAPN13Q6MZZ7 669 aaPredicted RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 ZNF585AQ6P3V2 769 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 DOK6Q6PKX4 331 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 GDPGP1Q6ZNW5 385 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 PYURFQ96I23 114 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 BEX1Q9HBH7 125 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 LRRC4CQ9HCJ2 640 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 MS4A12Q9NXJ0 267 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 FLRT1Q9NZU1 646 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 YARS2Q9Y2Z4 477 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 ZNF521Q96K83 1311 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 LATO43561 262 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 KIAA1161Q6NSJ0 714 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 OR4L1Q8NH43 312 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 ANGPTL6Q8NI99 470 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 TMBIM1Q969X1 311 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 RASD2Q96D21 266 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 MTERF1Q99551 399 aaKnown RBP8.48□□□□□ -1.05
LIG3-202ENST00000378526 P2RX6O15547 441 aa8.48□□□□□ -1.05
LIG3-202ENST00000378526 RPL7P18124 248 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms