RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 ABCB1P08183 1280 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-202ENST00000375299 NAGSQ8N159 534 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 OR9Q2Q8NGE9 314 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 MAGEB10Q96LZ2 347 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-202ENST00000375299 DMRTB1Q96MA1 342 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 ZNF556Q9HAH1 456 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 VPS29Q9UBQ0 182 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 EIF3FO00303 357 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-202ENST00000375299 ITGA2P17301 1181 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 CDC42P60953 191 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 ARMC4Q5T2S8 1044 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 HECTD3Q5T447 861 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 KRT73Q86Y46 540 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 WDR36Q8NI36 951 aaKnown RBP20.34■□□□□ 0.85
UPF3A-202ENST00000375299 SKA2Q8WVK7 121 aaPredicted RBP20.34■□□□□ 0.85
UPF3A-202ENST00000375299 PHOX2BQ99453 314 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 RRAGCQ9HB90 399 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 V9GYH0 126 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 PLXNB3Q9ULL4 1909 aa20.34■□□□□ 0.85
UPF3A-202ENST00000375299 BRCA2P51587 3418 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 SH3D21A4FU49 640 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 CYP7B1O75881 506 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 DOC2BQ14184 412 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 SF1Q15637 639 aaKnown RBP20.33■□□□□ 0.85
UPF3A-202ENST00000375299 TBRG1Q3YBR2 411 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 TPGS1Q6ZTW0 290 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 NPAS3Q8IXF0 933 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 ASB15Q8WXK1 588 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 WBP2Q969T9 261 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 COPS8Q99627 209 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 ASPNQ9BXN1 380 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 ZDHHC3Q9NYG2 299 aa20.33■□□□□ 0.85
UPF3A-202ENST00000375299 K7ERQ8 282 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 RGS5O15539 181 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 PCDH7O60245 1069 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 TRAPPC2P0DI81 140 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 TRAPPC2BP0DI82 140 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 OR1E2P47887 323 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 FLT3LGP49771 235 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 BCL2L1Q07817 233 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 CPTPQ5TA50 214 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 LRRC66Q68CR7 880 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 VN1R5Q7Z5H4 357 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 BBS7Q8IWZ6 715 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 CBARPQ8N350 705 aaPredicted RBP20.32■□□□□ 0.84
UPF3A-202ENST00000375299 GPR151Q8TDV0 419 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 OPALINQ96PE5 141 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 TMEM246Q9BRR3 403 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 CNPPD1Q9BV87 410 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 THSD1Q9NS62 852 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 MUTYHQ9UIF7 546 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 HMX3A6NHT5 357 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 AGAP14A8MT82 685 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 A8MX80 341 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 CCNB2O95067 398 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 ACSM2AQ08AH3 577 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 PTGES3Q15185 160 aaKnown RBP20.32■□□□□ 0.84
UPF3A-202ENST00000375299 ACSM2BQ68CK6 577 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 ANKS3Q6ZW76 656 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 NLRP8Q86W28 1048 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 VPS37AQ8NEZ2 397 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 EXOSC4Q9NPD3 245 aaKnown RBP20.32■□□□□ 0.84
UPF3A-202ENST00000375299 NMRK2Q9NPI5 230 aa20.32■□□□□ 0.84
UPF3A-202ENST00000375299 MEIOCA2RUB1 952 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF840PA6NDX5 716 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 GABRR3A8MPY1 467 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 CKBP12277 381 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 POLR2EP19388 210 aaKnown RBP20.31■□□□□ 0.84
UPF3A-202ENST00000375299 CCND3P30281 292 aaPredicted RBP20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF33BQ06732 778 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 HSPA14Q0VDF9 509 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 SMARCB1Q12824 385 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 MBTPS1Q14703 1052 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ZMAT1Q5H9K5 638 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 PLAG1Q6DJT9 500 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 GALNT6Q8NCL4 622 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 GPR26Q8NDV2 337 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 WDR20Q8TBZ3 569 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ASB11Q8WXH4 323 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 BARHL1Q9BZE3 327 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ZNF282Q9UDV7 671 aaPredicted RBP20.31■□□□□ 0.84
UPF3A-202ENST00000375299 BOLA1Q9Y3E2 137 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 KRT87PA6NCN2 255 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 PRAMEF25A6NGN4 478 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 NOTOA8MTQ0 251 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 TBL1XO60907 577 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 POU2F1P14859 743 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 CD22P20273 847 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 GKP32189 559 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 RPS19P39019 145 aaKnown RBP20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ALDH9A1P49189 494 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 B4GALNT1Q00973 533 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 IRF8Q02556 426 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 BAK1Q16611 211 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 ANXA8L1Q5VT79 327 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 LIPJQ5W064 366 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 TMPRSS11AQ6ZMR5 421 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 OR7G1Q8NGA0 311 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 FAM129BQ96TA1 746 aa20.31■□□□□ 0.84
UPF3A-202ENST00000375299 MAPKAP1Q9BPZ7 522 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms