RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 DOHHQ9BU89 302 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SPATA5L1Q9BVQ7 753 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PRR14Q9BWN1 585 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SLC17A9Q9BYT1 436 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NLNQ9BYT8 704 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 ING2Q9H160 280 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 EVA1AQ9H8M9 152 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NTN4Q9HB63 628 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 MIEF1Q9NQG6 463 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 OR6C2Q9NZP2 312 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PCOLCE2Q9UKZ9 415 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SUFUQ9UMX1 484 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 SNX7Q9UNH6 387 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 FAF1Q9UNN5 650 aaPredicted RBP8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 NEUROG3Q9Y4Z2 214 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 PCDHGB1Q9Y5G3 927 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 CENPFP49454 3210 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 DOCK6Q96HP0 2047 aa8.37□□□□□ -1.07
SNRNP40-202ENST00000373720 TRBC2A0A5B9 178 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 FAM221BA6H8Z2 402 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 URADA6NGE7 173 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 IGLON5A6NGN9 336 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PRR19A6NJB7 356 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ANHXE9PGG2 379 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 UPK1AO00322 258 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 DLGAP1O14490 977 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PRAMEF4O60810 478 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 E2F6O75461 281 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 JRKO75564 520 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PRKD3O94806 890 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SLITRK5O94991 958 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SERPINA1P01009 418 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SEMG1P04279 462 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 FURINP09958 794 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SMIM18P0DKX4 95 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ANXA8P13928 327 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 NCK1P16333 377 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ZNF10P21506 573 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TACR1P25103 407 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PDHA2P29803 388 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 GDI1P31150 447 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SHMT2P34897 504 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 FRKP42685 505 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 KIR2DL1P43626 348 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PRIM2P49643 509 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ERFP50548 548 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ATXN3P54252 364 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ITGA1P56199 1179 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 RPS13P62277 151 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PHC1P78364 1004 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 RAE1P78406 368 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 REEP5Q00765 189 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SEMG2Q02383 582 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 MVKQ03426 396 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 GRSF1Q12849 480 aaKnown RBP eCLIP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SKIV2LQ15477 1246 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 WSCD2Q2TBF2 565 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 UAP1L1Q3KQV9 507 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 CRB2Q5IJ48 1285 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 EOGTQ5NDL2 527 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 BROXQ5VW32 411 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PRAMEF9Q5VWM5 478 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 NIPAL1Q6NVV3 410 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ZCCHC8Q6NZY4 707 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TMEM64Q6YI46 380 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TMEM26Q6ZUK4 368 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 SLC9B2Q86UD5 537 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 STK32CQ86UX6 486 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TRIM69Q86WT6 500 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 HORMAD1Q86X24 394 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ARMC8Q8IUR7 673 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 EPHX4Q8IUS5 362 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ZDHHC21Q8IVQ6 265 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 RBM12BQ8IXT5 1001 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 GJD3Q8N144 294 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 HDDC3Q8N4P3 179 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TP53I13Q8NBR0 393 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 C16orf78Q8WTQ4 265 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PMM1Q92871 262 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ZBED6CLQ96FA7 236 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 HBEGFQ99075 208 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 MCOLN1Q9GZU1 580 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 KIR3DX1Q9H7L2 352 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 CAAP1Q9H8G2 361 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 DDX31Q9H8H2 851 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 REEP1Q9H902 201 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 THSD1Q9NS62 852 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 RSL24D1Q9UHA3 163 aaKnown RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 MBD1Q9UIS9 605 aaPredicted RBP8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 PSME2Q9UL46 239 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 ANGPT4Q9Y264 503 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TPRKBQ9Y3C4 175 aa8.36□□□□□ -1.07
SNRNP40-202ENST00000373720 TMEM265A0A087WTH1 108 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 A0A1W2PRB8 838 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 TMEM202A6NGA9 273 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 LRRC72A6NJI9 287 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 OR5K4A6NMS3 321 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 RNF223E7ERA6 249 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 MPZL2O60487 215 aa8.35□□□□□ -1.07
SNRNP40-202ENST00000373720 NOL3O60936 208 aaKnown RBP8.35□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms