RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 WDR20Q8TBZ3 569 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 CEP19Q96LK0 163 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 NEDD4LQ96PU5 975 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 MGLLQ99685 303 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 TCF25Q9BQ70 676 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 NDEL1Q9GZM8 345 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 N6AMT1Q9Y5N5 214 aa15.76■□□□□ 0.11
SDC4-201ENST00000372733 ARHGAP33O14559 1287 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 CYP2A7P20853 494 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 LHCGRP22888 699 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 DOC2AQ14183 400 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SSX1Q16384 188 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 MICAQ29983 383 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 IFI44LQ53G44 452 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 NRARPQ7Z6K4 114 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 BBS7Q8IWZ6 715 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 CASD1Q96PB1 797 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SLC30A2Q9BRI3 323 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SYT17Q9BSW7 474 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SPATA9Q9BWV2 254 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 GPATCH2Q9NW75 528 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SPATA6Q9NWH7 488 aaPredicted RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 SH3BP4Q9P0V3 963 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 CD84Q9UIB8 345 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 ACSL6Q9UKU0 697 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 TMPRSS11EQ9UL52 423 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 OGDHLQ9ULD0 1010 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 CFL2Q9Y281 166 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 WBP11Q9Y2W2 641 aaKnown RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 KLK4Q9Y5K2 254 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 PLXNB3Q9ULL4 1909 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SOCS5O75159 536 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 GPX5O75715 221 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 MFN2O95140 757 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SNX4O95219 450 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 ANXA4P09525 319 aaPredicted RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 ZNF385BQ569K4 471 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 RETSATQ6NUM9 610 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 WDR36Q8NI36 951 aaKnown RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 OVCA2Q8WZ82 227 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 PIK3R3Q92569 461 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 FOXJ1Q92949 421 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 OR2A14Q96R47 310 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 FAM129BQ96TA1 746 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 C2orf49Q9BVC5 232 aaPredicted RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 SMURF1Q9HCE7 757 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 DDX28Q9NUL7 540 aaKnown RBP15.75■□□□□ 0.11
SDC4-201ENST00000372733 BTNL2Q9UIR0 455 aa15.75■□□□□ 0.11
SDC4-201ENST00000372733 SERTM1A2A2V5 107 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 PCDH17O14917 1159 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 AZGP1P25311 298 aaKnown RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 HTR3AP46098 478 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 EIF4HQ15056 248 aaKnown RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 SLX4IPQ5VYV7 408 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 VASH1Q7L8A9 365 aaPredicted RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 OR4K1Q8NGD4 311 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 NFKBIDQ8NI38 313 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 CRELD1Q96HD1 420 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 TMEM121BQ9BXQ6 578 aaPredicted RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 EXOSC4Q9NPD3 245 aaKnown RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 KLHL42Q9P2K6 505 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 CLEC4EQ9ULY5 219 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 ANKRD34BA5PLL1 514 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 GFYI3L273 518 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 PLK4O00444 970 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 ZNF821O75541 412 aaPredicted RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 IDSP22304 550 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 TNFSF8P32971 234 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 MVDP53602 400 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 GANABQ14697 944 aaKnown RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 TEAD4Q15561 434 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 TAF12Q16514 161 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 ZMAT1Q5H9K5 638 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 DGKKQ5KSL6 1271 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 ZNF544Q6NX49 715 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 TMC5Q6UXY8 1006 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 UBQLNLQ8IYU4 475 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 LILRB4Q8NHJ6 448 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 C11orf24Q96F05 449 aaPredicted RBP15.74■□□□□ 0.11
SDC4-201ENST00000372733 CORO2BQ9UQ03 480 aa15.74■□□□□ 0.11
SDC4-201ENST00000372733 FAM227AF5H4B4 570 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 H3BM21 787 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 RGS5O15539 181 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 IGSF6O95976 241 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 SLC10A3P09131 477 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 PCSK2P16519 638 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 PPIBP23284 216 aaKnown RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 SERPINA4P29622 427 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 TUFMP49411 452 aaKnown RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 C21orf58P58505 322 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 PTGES3Q15185 160 aaKnown RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 THOC6Q86W42 341 aaKnown RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 CACTIN-AS1Q8N1I8 211 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 VANGL1Q8TAA9 524 aaPredicted RBP15.73■□□□□ 0.11
SDC4-201ENST00000372733 MED8Q96G25 268 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 DMRTB1Q96MA1 342 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 OR2B2Q9GZK3 357 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 ZNF556Q9HAH1 456 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 WDR70Q9NW82 654 aa15.73■□□□□ 0.11
SDC4-201ENST00000372733 IGLV3-16A0A075B6K0 115 aa15.73■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms