RNA–Protein interactions for RNA: ENST00000370496.3

COL9A1-204, Transcript of collagen type IX alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL9A1, Length 1,372 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-204ENST00000370496 ACSS2Q9NR19 701 aa14.09□□□□□ -0.15
COL9A1-204ENST00000370496 SLC22A11Q9NSA0 550 aa14.09□□□□□ -0.15
COL9A1-204ENST00000370496 ZNF282Q9UDV7 671 aaPredicted RBP14.09□□□□□ -0.15
COL9A1-204ENST00000370496 NXT1Q9UKK6 140 aaKnown RBP14.09□□□□□ -0.15
COL9A1-204ENST00000370496 PLLPQ9Y342 182 aa14.09□□□□□ -0.15
COL9A1-204ENST00000370496 NAALAD2Q9Y3Q0 740 aa14.09□□□□□ -0.15
COL9A1-204ENST00000370496 SLC22A7Q9Y694 548 aa14.09□□□□□ -0.15
COL9A1-204ENST00000370496 NUP210LQ5VU65 1888 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 CDC14CA4D256 554 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 ZNF860A6NHJ4 632 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 H0YIG0 161 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 SGK494L7N484 410 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 FFAR3O14843 346 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 NKX2-8O15522 239 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 GPR42O15529 346 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 FOXS1O43638 330 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 ALBP02768 609 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 CPA3P15088 417 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 ALOX12P18054 663 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 CDH13P55290 713 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 RAB8AP61006 207 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 CLCQ05315 142 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 TRAF3Q13114 568 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 IL10RAQ13651 578 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 DEFB134Q4QY38 66 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 FAM69BQ5VUD6 431 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 MRPL14Q6P1L8 145 aaKnown RBP14.08□□□□□ -0.16
COL9A1-204ENST00000370496 OVCH1Q7RTY7 1134 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 LAS2Q8IYD9 372 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 CCNYL1Q8N7R7 359 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 AMER3Q8N944 861 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 L3MBTL4Q8NA19 623 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 OR7G3Q8NG95 312 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 OR2Y1Q8NGV0 311 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 TRPC4APQ8TEL6 797 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 FAR2Q96K12 515 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 MAGEB10Q96LZ2 347 aaPredicted RBP14.08□□□□□ -0.16
COL9A1-204ENST00000370496 RHBGQ9H310 441 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 PRORYQ9H606 182 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 SOX17Q9H6I2 414 aaPredicted RBP14.08□□□□□ -0.16
COL9A1-204ENST00000370496 ZBTB26Q9HCK0 441 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 C14orf105Q9NVL8 296 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 HCN3Q9P1Z3 774 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 ZNF490Q9ULM2 529 aaPredicted RBP14.08□□□□□ -0.16
COL9A1-204ENST00000370496 STK38LQ9Y2H1 464 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 RNF11Q9Y3C5 154 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 MAP4K5Q9Y4K4 846 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 PCDHGA11Q9Y5H2 935 aa14.08□□□□□ -0.16
COL9A1-204ENST00000370496 DSPP15924 2871 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 A0A088AWK7 358 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 H0YIV9 168 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 ERI3O43414 337 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 CNOT3O75175 753 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 MLYCDO95822 493 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 ONECUT2O95948 504 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 IMPDH1P20839 514 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 ZNF10P21506 573 aaPredicted RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 HNRNPH1P31943 449 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 OTX2P32243 289 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SNRPNP63162 240 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 MAT1AQ00266 395 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 TGM3Q08188 693 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 HYAL2Q12891 473 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 LCP2Q13094 533 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 PCLAFQ15004 111 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 NKG7Q16617 165 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 UGT8Q16880 541 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SYT16Q17RD7 645 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 UNC50Q53HI1 259 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 CFAP157Q5JU67 520 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 ATP1A1-AS1Q5TC04 95 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 TTC19Q6DKK2 380 aaPredicted RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 TRIM40Q6P9F5 258 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SHISA6Q6ZSJ9 500 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 VN1R5Q7Z5H4 357 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 MILR1Q7Z6M3 343 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 PDSS2Q86YH6 399 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 RAB43Q86YS6 212 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 PRSS58Q8IYP2 241 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 OR4F6Q8NGB9 312 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 TCP10LQ8TDR4 215 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 UTP15Q8TED0 518 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SNRNP27Q8WVK2 155 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 MIEF2Q96C03 454 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 PGM2Q96G03 612 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 NTMT1Q9BV86 223 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 REXO4Q9GZR2 422 aaKnown RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SLC26A1Q9H2B4 701 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 KLHL31Q9H511 634 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 COPS7BQ9H9Q2 264 aaPredicted RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 MKKSQ9NPJ1 570 aaPredicted RBP14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SLC17A7Q9P2U7 560 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 ADGRE2Q9UHX3 823 aa14.07□□□□□ -0.16
COL9A1-204ENST00000370496 SCN3AQ9NY46 2000 aa14.06□□□□□ -0.16
COL9A1-204ENST00000370496 LRIT2A6NDA9 550 aa14.06□□□□□ -0.16
COL9A1-204ENST00000370496 GALR3O60755 368 aaPredicted RBP14.06□□□□□ -0.16
COL9A1-204ENST00000370496 KLF7O75840 302 aaPredicted RBP14.06□□□□□ -0.16
COL9A1-204ENST00000370496 B3GALT4O96024 378 aa14.06□□□□□ -0.16
COL9A1-204ENST00000370496 CREB1P16220 341 aa14.06□□□□□ -0.16
COL9A1-204ENST00000370496 FOXL2P58012 376 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms