RNA–Protein interactions for RNA: ENST00000368045.3

CD48-201, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,793 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-201ENST00000368045 LEFTY1O75610 366 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 RFPL2O75678 378 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CDK1P06493 297 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CD40LGP29965 261 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 NNMTP40261 264 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 MVDP53602 400 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CTSCP53634 463 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 NCS1P62166 190 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 RPS13P62277 151 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 LSM3P62310 102 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 PPIGQ13427 754 aaKnown RBP eCLIP13.73□□□□□ -0.21
CD48-201ENST00000368045 ZNF630Q2M218 657 aaPredicted RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 BTLAQ7Z6A9 289 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 TSEN54Q7Z6J9 526 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 LAS2Q8IYD9 372 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 OR10G2Q8NGC3 310 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 IRF7Q92985 503 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 FEVQ99581 238 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CORO1BQ9BR76 489 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 RHNO1Q9BSD3 238 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 SMG9Q9H0W8 520 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 MMP27Q9H306 513 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 MYNNQ9NPC7 610 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 PAIP2BQ9ULR5 123 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 DOLKQ9UPQ8 538 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 DYRK1BQ9Y463 629 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 PSMD11O00231 422 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 GPR37L1O60883 481 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 LCKP06239 509 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 ZNF8P17098 575 aaPredicted RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 GJA1P17302 382 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 TGM1P22735 817 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 ALDH4A1P30038 563 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CRATP43155 626 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CTSKP43235 329 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 PREPP48147 710 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CLK1P49759 484 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 TMEM115Q12893 351 aaPredicted RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 EIF4HQ15056 248 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 SF1Q15637 639 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 MICAQ29983 383 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 BCL7AQ4VC05 210 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 ZNF805Q5CZA5 627 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 ARSIQ5FYB1 569 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 HIST2H2AA3Q6FI13 130 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 GPR153Q6NV75 609 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 TRIM40Q6P9F5 258 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 NLRP8Q86W28 1048 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 LACC1Q8IV20 430 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 GPR156Q8NFN8 814 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 GEMIN6Q8WXD5 167 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 MAL2Q969L2 176 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 NEIL2Q969S2 332 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 CAPNS2Q96L46 248 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 KCNC2Q96PR1 638 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 DSN1Q9H410 356 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 SPHK2Q9NRA0 654 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 TBC1D14Q9P2M4 693 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 SPASTQ9UBP0 616 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 IL36AQ9UHA7 158 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 EXO1Q9UQ84 846 aaKnown RBP13.73□□□□□ -0.21
CD48-201ENST00000368045 TESMINQ9Y4I5 508 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 PCDHGA2Q9Y5H1 932 aa13.73□□□□□ -0.21
CD48-201ENST00000368045 PLXNA2O75051 1894 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 ISPDA4D126 451 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 TAF4O00268 1085 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 NRG2O14511 850 aaPredicted RBP13.72□□□□□ -0.21
CD48-201ENST00000368045 C1orf105O95561 183 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 ADH1AP07327 375 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 C1GALT1C1LP0DN25 315 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 TYRP14679 529 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 AQP1P29972 269 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 MMP12P39900 470 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 PPP5CP53041 499 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 EEF1A2Q05639 463 aaKnown RBP13.72□□□□□ -0.21
CD48-201ENST00000368045 SCARB2Q14108 478 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 CCSMST1Q4G0I0 132 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 ZNF658BQ4V348 819 aaPredicted RBP13.72□□□□□ -0.21
CD48-201ENST00000368045 ZNF385BQ569K4 471 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 CRB2Q5IJ48 1285 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 TOR1AIP1Q5JTV8 583 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 PERM1Q5SV97 790 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 ZNF648Q5T619 568 aaPredicted RBP13.72□□□□□ -0.21
CD48-201ENST00000368045 AGAP7PQ5VUJ5 663 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 TMEM236Q5W0B7 351 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 ERAP2Q6P179 960 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 UNC5DQ6UXZ4 953 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 SLC39A5Q6ZMH5 540 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 USP43Q70EL4 1123 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 IKBIPQ70UQ0 350 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 COMMD6Q7Z4G1 85 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 TMPRSS11BQ86T26 416 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 SLC5A8Q8N695 610 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 KREMEN2Q8NCW0 462 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 MCFD2Q8NI22 146 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 UBE2FQ969M7 185 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 PPCDCQ96CD2 204 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 VWCEQ96DN2 955 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 CRELD1Q96HD1 420 aa13.72□□□□□ -0.21
CD48-201ENST00000368045 MRGPRX3Q96LB0 322 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms