RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 MTPAPQ9NVV4 582 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 RBPJLQ9UBG7 517 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ACSL5Q9ULC5 683 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 PCDHGB6Q9Y5F9 930 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 KANTRA0A1W2PQU2 76 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ANKRD34BA5PLL1 514 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 SH2D7A6NKC9 451 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 J3QRK9 145 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 FADS2O95864 444 aaKnown RBP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 TYRP14679 529 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ZNF823P16415 610 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 CYP2F1P24903 491 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 MSX1P28360 303 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 AFF3P51826 1226 aaKnown RBP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 PUM1Q14671 1186 aaKnown RBP eCLIP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 PTPRCAPQ14761 206 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 CLPPQ16740 277 aaPredicted RBP8.38□□□□□ -1.07
SYNE1-206ENST00000367253 KCTD8Q6ZWB6 473 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 PIGZQ86VD9 579 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ANKK1Q8NFD2 765 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 VN1R2Q8NFZ6 395 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 OR4C15Q8NGM1 316 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 FAM136AQ96C01 138 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 FBXL8Q96CD0 374 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 GPER1Q99527 375 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ZNF350Q9GZX5 532 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 OR10A4Q9H209 315 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 UBQLN2Q9UHD9 624 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 ZNF639Q9UID6 485 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 FLVCR2Q9UPI3 526 aa8.38□□□□□ -1.07
SYNE1-206ENST00000367253 UGT2B11O75310 529 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ZNF254O75437 659 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PGRP06401 933 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TSPAN8P19075 237 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SHMT2P34897 504 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CDKN2CP42773 168 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 C1QBPQ07021 282 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ANXA8L1Q5VT79 327 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 DPY19L3Q6ZPD9 716 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 OAFQ86UD1 273 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TSPYL5Q86VY4 417 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ZZZ3Q8IYH5 903 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 C12orf45Q8N5I9 185 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ESX1Q8N693 406 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SEMA4DQ92854 862 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 DNASE1L2Q92874 299 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 HDAC10Q969S8 669 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CAMK1GQ96NX5 476 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TRNT1Q96Q11 434 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PCDHA3Q9Y5H8 950 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 MAU2Q9Y6X3 613 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 GSC2O15499 205 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CD6P30203 668 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TLE1Q04724 770 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 HABP2Q14520 560 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PLEKHG4Q58EX7 1191 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 WDR74Q6RFH5 385 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 LYPD8Q6UX82 237 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 S100A7AQ86SG5 101 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TMEM234Q8WY98 164 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 NDRG1Q92597 394 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ZDHHC16Q969W1 377 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 IFT27Q9BW83 186 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TRIM2Q9C040 744 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 WASH6PQ9NQA3 447 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ATXN7L1Q9ULK2 861 aaPredicted RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 NOP16Q9Y3C1 178 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 WNT6Q9Y6F9 365 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ADAMTS7Q9UKP4 1686 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 FAM237BA0A1B0GVD1 139 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SULT1C2O00338 296 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ENPP3O14638 875 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CHST10O43529 356 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PROSCO94903 275 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ADAP00813 363 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 RLN2P04090 185 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SERPINA6P08185 405 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PPP3CBP16298 524 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CPEP16870 476 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 FAAP100Q0VG06 881 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SNAPC1Q16533 368 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SLC9B1Q4ZJI4 515 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 RNASE12Q5GAN4 147 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ARHGAP11AQ6P4F7 1023 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 ZNF549Q6P9A3 640 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 PTCHD4Q6ZW05 846 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 BBS12Q6ZW61 710 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 JAZF1Q86VZ6 243 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 FTMTQ8N4E7 242 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 FNDC8Q8TC99 324 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 RAB2BQ8WUD1 216 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 KAT5Q92993 513 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TEFMQ96QE5 360 aaKnown RBP8.37□□□□□ -1.07
SYNE1-206ENST00000367253 OR2B2Q9GZK3 357 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 TWSG1Q9GZX9 223 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 FAM86C1Q9NVL1 165 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 RIMKLBQ9ULI2 386 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 HES2Q9Y543 173 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 CNTRLQ7Z7A1 2325 aa8.37□□□□□ -1.07
SYNE1-206ENST00000367253 SMPD2O60906 423 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms