RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 IPCEF1Q8WWN9 437 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 IGSF21Q96ID5 467 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 SORBS1Q9BX66 1292 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 FAM120CQ9NX05 1096 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 NRG2O14511 850 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 SCAMP2O15127 329 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 RPLP0P05388 317 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CBSLP0DN79 551 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CBSP35520 551 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 HNMTP50135 292 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 RNF130Q86XS8 419 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 PARP16Q8N5Y8 322 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CELF2-AS1Q8N7Q2 184 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 ASZ1Q8WWH4 475 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CLP1Q92989 425 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 HRASLS5Q96KN8 279 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 VPS35Q96QK1 796 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 MRPL9Q9BYD2 267 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 NUAK2Q9H093 628 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 FAM83DQ9H4H8 585 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 AGAP5A6NIR3 686 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 H3BM21 787 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 TPST2O60704 377 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 SOCS5O75159 536 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 KCNK2O95069 426 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 ACVR2AP27037 513 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 MXD1Q05195 221 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 C2orf80Q0P641 193 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 C22orf39Q6P5X5 142 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 GATAD2AQ86YP4 633 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 UBE2J2Q8N2K1 259 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 SYNPOQ8N3V7 929 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 DNAJC22Q8N4W6 341 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 ST13P5Q8NFI4 369 aaPredicted RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 OR7G3Q8NG95 312 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 WDR36Q8NI36 951 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 MRPS31Q92665 395 aaKnown RBP11.67□□□□□ -0.54
CLIP3-201ENST00000360535 OR4K3Q96R72 315 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 CNPPD1Q9BV87 410 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 GABARAPL1Q9H0R8 117 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 EHD3Q9NZN3 535 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 PSORS1C1Q9UIG5 152 aa11.67□□□□□ -0.54
CLIP3-201ENST00000360535 UNC80Q8N2C7 3258 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 METTL15A6NJ78 407 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CLCA1A8K7I4 914 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 DSCR3O14972 297 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ASNA1O43681 348 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 IGFBP1P08833 259 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 SLC10A3P09131 477 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ADORA3P0DMS8 318 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 GGT2P36268 569 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 RECQLP46063 649 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 SREBF2Q12772 1141 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CSTF3Q12996 717 aaKnown RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 SCARB2Q14108 478 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 RSBN1Q5VWQ0 802 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CCBE1Q6UXH8 406 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ZNF783Q6ZMS7 281 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 BCDIN3DQ7Z5W3 292 aaKnown RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 TCAIMQ8N3R3 496 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 B3GNT7Q8NFL0 401 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 VANGL1Q8TAA9 524 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ATL1Q8WXF7 558 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 NEIL2Q969S2 332 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 DDX28Q9NUL7 540 aaKnown RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ANKMY1Q9P2S6 941 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 HSPE1-MOB4S4R3N1 261 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 TFECO14948 347 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 KIAA0513O60268 411 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 GCM2O75603 506 aaPredicted RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 URODP06132 367 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 IL1RNP18510 177 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 GJA8P48165 433 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 ALDH9A1P49189 494 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 TGM4P49221 684 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 SELENOWP63302 87 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 MTAPQ13126 283 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 DEPDC1Q5TB30 811 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 MFSD4BQ5TF39 518 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 FAHD1Q6P587 224 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 PTCHD4Q6ZW05 846 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 GAREM2Q75VX8 874 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 TMEM25Q86YD3 366 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 OVCA2Q8WZ82 227 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 FAM129BQ96TA1 746 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CORO1BQ9BR76 489 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 WRAP53Q9BUR4 548 aaKnown RBP11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CDADC1Q9BWV3 514 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 EHD1Q9H4M9 534 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 INSL5Q9Y5Q6 135 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 NUMA1Q14980 2115 aa11.66□□□□□ -0.54
CLIP3-201ENST00000360535 CDK1P06493 297 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 IDSP22304 550 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 TCEA1P23193 301 aaKnown RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CST5P28325 142 aaPredicted RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 CSNK1DP48730 415 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 COPZ1P61923 177 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 RAE1P78406 368 aaKnown RBP11.65□□□□□ -0.54
CLIP3-201ENST00000360535 IFI44LQ53G44 452 aa11.65□□□□□ -0.54
CLIP3-201ENST00000360535 RPS26P11Q5JNZ5 115 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms