RNA–Protein interactions for RNA: ENST00000345009.8

SNCA-202, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 1,096 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-202ENST00000345009 TLX3O43711 291 aaPredicted RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 KRT6AP02538 564 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 ALBP02768 609 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 KRT6BP04259 564 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 CTSBP07858 339 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 RAB40ALP0C0E4 278 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 ITGAXP20702 1163 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 PTX3P26022 381 aaPredicted RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 SERPINB5P36952 375 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 DLSTP36957 453 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 KRT6CP48668 564 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 SLC18A1P54219 525 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 CYP4F2P78329 520 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 MC1RQ01726 317 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 OCA2Q04671 838 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 CLN3Q13286 438 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 GGTA1PQ4G0N0 100 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 TMEM35AQ53FP2 167 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 PRAMEF17Q5VTA0 474 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 HHATQ5VTY9 493 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 C1orf189Q5VU69 101 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 TMEM214Q6NUQ4 689 aaKnown RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 TIPARPQ7Z3E1 657 aaKnown RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 C10orf107Q8IVU9 208 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP11.26□□□□□ -0.61
SNCA-202ENST00000345009 ANKRD53Q8N9V6 530 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 SLC38A9Q8NBW4 561 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 OR7G3Q8NG95 312 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 MMABQ96EY8 250 aaPredicted RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 CMTM7Q96FZ5 175 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 GBP5Q96PP8 586 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 ROGDIQ9GZN7 287 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 CHST8Q9H2A9 424 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 CLK4Q9HAZ1 481 aaKnown RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 ZNF304Q9HCX3 659 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 PSD3Q9NYI0 1048 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 SLC17A7Q9P2U7 560 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 NXT1Q9UKK6 140 aaKnown RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 ZNF490Q9ULM2 529 aaPredicted RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 FARSAQ9Y285 508 aaKnown RBP11.26□□□□□ -0.61
SNCA-202ENST00000345009 RNF11Q9Y3C5 154 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 TSC22D4Q9Y3Q8 395 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 SDK2Q58EX2 2172 aa11.26□□□□□ -0.61
SNCA-202ENST00000345009 MAP1BP46821 2468 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 A0A087WV48 116 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 TEX51A0A1B0GUA7 166 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 LRIT2A6NDA9 550 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 HMGB1P1B2RPK0 211 aaPredicted RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 SNUPNO95149 360 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 NSA2O95478 260 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 ENO1P06733 434 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 BPGMP07738 259 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 CREB1P16220 341 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ALOX12P18054 663 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 SERPINB4P48594 390 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 DNASE1L3Q13609 305 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 DDX39BQ13838 428 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 TGIF1Q15583 401 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ZRSR2Q15696 482 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 ARHGAP40Q5TG30 622 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 MLIPQ5VWP3 458 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 FRG2Q64ET8 278 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 TRIM40Q6P9F5 258 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ZNF517Q6ZMY9 492 aaPredicted RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 SPACA3Q8IXA5 215 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 KCT2Q8NC54 265 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 OR4F6Q8NGB9 312 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 OR52B6Q8NGF0 335 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 HUS1BQ8NHY5 278 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 METTL6Q8TCB7 284 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 CREB3L4Q8TEY5 395 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 FKBP10Q96AY3 582 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ZBTB9Q96C00 473 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 TLCD1Q96CP7 247 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ATP6V1G3Q96LB4 118 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 NSUN5Q96P11 429 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 FRG2BQ96QU4 278 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 PAIP2Q9BPZ3 127 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 MACROD1Q9BQ69 325 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 YIPF2Q9BWQ6 316 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 SLC29A3Q9BZD2 475 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 REXO4Q9GZR2 422 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 SPNS1Q9H2V7 528 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 C12orf65Q9H3J6 166 aaKnown RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 ZBTB26Q9HCK0 441 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 MID1IP1Q9NPA3 183 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 AHSPQ9NZD4 102 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ZNF282Q9UDV7 671 aaPredicted RBP11.25□□□□□ -0.61
SNCA-202ENST00000345009 TRPS1Q9UHF7 1281 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 CROTQ9UKG9 612 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 ASPMQ8IZT6 3477 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 WDFY3Q8IZQ1 3526 aa11.25□□□□□ -0.61
SNCA-202ENST00000345009 EPG5Q9HCE0 2579 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 DSPP15924 2871 aaKnown RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 A0A0A6YYC8 382 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 TMEM120BA0PK00 339 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 I3L1I5 382 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 AGPSO00116 658 aa11.24□□□□□ -0.61
SNCA-202ENST00000345009 FOXE1O00358 373 aaPredicted RBP11.24□□□□□ -0.61
SNCA-202ENST00000345009 P2RX6O15547 441 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms