RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 WDR45Q9Y484 360 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 LAMB1P07942 1786 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 BDKRB1P46663 353 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 DSTNP60981 165 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 AMZ1Q400G9 498 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 DEFB134Q4QY38 66 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SLC9B1Q4ZJI4 515 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SNAP47Q5SQN1 464 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GRHL2Q6ISB3 625 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 IYDQ6PHW0 289 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ZZZ3Q8IYH5 903 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 OR9I1Q8NGQ6 314 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 NCSTNQ92542 709 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 LRCH3Q96II8 777 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 COL21A1Q96P44 957 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 IRF2BPLQ9H1B7 796 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF395Q9H8N7 513 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GMPPBQ9Y5P6 360 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 HIVEP2P31629 2446 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 HNRNPCL2B2RXH8 293 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ITM2AO43736 263 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 MPZL2O60487 215 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PEX11BO96011 259 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 MASP1P48740 699 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SLC16A1P53985 500 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 LYSMD4Q5XG99 296 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PHTF2Q8N3S3 785 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 OR4A15Q8NGL6 344 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 MYADMQ96S97 322 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GSTO2Q9H4Y5 243 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PRDM4Q9UKN5 801 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 A0A096LPI6 279 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 POLR1CO15160 346 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 FHP07954 510 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 CD247P20963 164 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 NEK2P51955 445 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 NRG3P56975 720 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RPP38P78345 283 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 LRIT3Q3SXY7 679 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 OR4F3Q6IEY1 312 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PARM1Q6UWI2 310 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SYVN1Q86TM6 617 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ANKRD46Q86W74 232 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 NRROSQ86YC3 692 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SLC44A3Q8N4M1 653 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 CSNK1A1LQ8N752 337 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GPR151Q8TDV0 419 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GAL3ST3Q96A11 431 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ZHX1-C8orf76Q96EF9 292 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 C1QTNF3Q9BXJ4 246 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 MEAF6Q9HAF1 191 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 BRF2Q9HAW0 419 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PCDHB3Q9Y5E6 796 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 TMEM233B4DJY2 109 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SLCO2B1O94956 709 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 HSD17B1P14061 328 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 DNAJA1P31689 397 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 RPS9P46781 194 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PGFP49763 221 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 C1orf61Q13536 156 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 KCTD19Q17RG1 926 aaPredicted RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 ZNF311Q5JNZ3 666 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PRPF38BQ5VTL8 546 aaKnown RBP6.61□□□□□ -1.35
SF3B1-201ENST00000335508 FIGLAQ6QHK4 219 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 SUSD1Q6UWL2 747 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 PLEKHM3Q6ZWE6 761 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 GPR141Q7Z602 305 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 POLR1DQ9Y2S0 133 aa6.61□□□□□ -1.35
SF3B1-201ENST00000335508 OR2B3O76000 313 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ATP6V1B1P15313 513 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 MAGEA12P43365 314 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CDK9P50750 372 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 SH3BP2P78314 561 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 RALGDSQ12967 914 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 VEZF1Q14119 521 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 HENMT1Q5T8I9 393 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 CHMP1BQ7LBR1 199 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TREML1Q86YW5 311 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 AMER2Q8N7J2 671 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 GEMIN6Q8WXD5 167 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 FAM192AQ9GZU8 254 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 POLR1BQ9H9Y6 1135 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PACSIN3Q9UKS6 424 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 ERGIC3Q9Y282 383 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 MAGED1Q9Y5V3 778 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PCP4L1A6NKN8 68 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PRRT4C9JH25 899 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 H3BNX3 289 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 C7P10643 843 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 RPS13P62277 151 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 DCST1Q5T197 706 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 Q6ZSR6 202 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 SLC15A3Q8IY34 581 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 C2orf73Q8N5S3 287 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 YTHDF1Q9BYJ9 559 aaKnown RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PLCL2Q9UPR0 1127 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 TRBC2A0A5B9 178 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 BCAT2O15382 392 aaPredicted RBP6.6□□□□□ -1.35
SF3B1-201ENST00000335508 PEX1O43933 1283 aa6.6□□□□□ -1.35
SF3B1-201ENST00000335508 SLC25A12O75746 678 aa6.6□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms