RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 A0A1W2PPM1 405 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 DIRAS3O95661 229 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 LRRTM4Q86VH4 590 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 MMAAQ8IVH4 418 aaKnown RBP9.05□□□□□ -0.96
CUX1-201ENST00000292535 PACRGLQ8N7B6 248 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 POF1BQ8WVV4 589 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 HBEGFQ99075 208 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 FAM149AA5PLN7 773 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 HOXB2P14652 356 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 CTBP2P56545 445 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 RPL26P61254 145 aaKnown RBP9.05□□□□□ -0.96
CUX1-201ENST00000292535 PMS2P3Q13401 168 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 SLC36A3Q495N2 470 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 GDPD4Q6W3E5 623 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 TAS1R3Q7RTX0 852 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 TMEM80Q96HE8 168 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 TMEM41AQ96HV5 264 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 GAL3ST1Q99999 423 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 RABL2AQ9UBK7 228 aaPredicted RBP9.05□□□□□ -0.96
CUX1-201ENST00000292535 RABL2BQ9UNT1 228 aa9.05□□□□□ -0.96
CUX1-201ENST00000292535 RTCAO00442 366 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 FHP07954 510 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SOX9P48436 509 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LIN52Q52LA3 116 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 COMTD1Q86VU5 262 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 OR5J2Q8NH18 312 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 CNN2Q99439 309 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 FEM1AQ9BSK4 669 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 GDI1P31150 447 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 VIPR1P32241 457 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 MTPNP58546 118 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 TIGD5Q53EQ6 642 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SWT1Q5T5J6 900 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 BANPQ8N9N5 519 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 KCNH6Q9H252 994 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PSPHP78330 225 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 FSTL1Q12841 308 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DAZLQ92904 295 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 TRIM43Q96BQ3 446 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 ITPAQ9BY32 194 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 FAM221BA6H8Z2 402 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 IRF2P14316 349 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 MLLT6P55198 1093 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 FAM46DQ8NEK8 389 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SETD7Q8WTS6 366 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 MOAP1Q96BY2 351 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 BCO2Q9BYV7 579 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SMOC2Q9H3U7 446 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 FAM120CQ9NX05 1096 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 POMPQ9Y244 141 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PRKD3O94806 890 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 BRCC3P46736 316 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 HSD11B2P80365 405 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DNASE1L3Q13609 305 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ZC3H14Q6PJT7 736 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 TMIGD1Q6UXZ0 262 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LPIN3Q9BQK8 851 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PELOQ9BRX2 385 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 RGCCQ9H4X1 137 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 TAS2R1Q9NYW7 299 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DFNA5O60443 496 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RPP14O95059 124 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 VNN2O95498 520 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ZNF84P51523 738 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RPS21P63220 83 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 MARCH9Q86YJ5 346 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 CHPT1Q8WUD6 406 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 CPT1BQ92523 772 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 KCNJ9Q92806 393 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 OR2M4Q96R27 311 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 CHIAQ9BZP6 476 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SH2B3Q9UQQ2 575 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ACOT7O00154 380 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 JMJD7P0C870 316 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 IRF2BP2Q7Z5L9 587 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ILDR1Q86SU0 546 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 HSPA12BQ96MM6 686 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ERVK-18Q9QC07 812 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 DOCK8Q8NF50 2099 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 MDFIC2A0A1B0GVS7 189 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 PLSCR1O15162 318 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 SPATA31C1P0DKV0 1188 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RAC2P15153 192 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RPS3AP61247 264 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 BAIAP2L2Q6UXY1 529 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 LDB1Q86U70 411 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 CPT1CQ8TCG5 803 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RHBDF1Q96CC6 855 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 NAA11Q9BSU3 229 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 KLHL13Q9P2N7 655 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 BLOC1S5-TXNDC5H3BN57 136 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ELNP15502 786 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 S100PP25815 95 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 MSX2P35548 267 aaPredicted RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 CLCNKAP51800 687 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 RPP30P78346 268 aaKnown RBP9.04□□□□□ -0.96
CUX1-201ENST00000292535 ITPRIPL2Q3MIP1 535 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 FRG2Q64ET8 278 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 EEF1DP3Q658K8 133 aa9.04□□□□□ -0.96
CUX1-201ENST00000292535 ARL14EPQ8N8R7 260 aaPredicted RBP9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms