RNA–Protein interactions for RNA: ENST00000639856.1

TRIM3-215, Transcript of tripartite motif containing 3, humanhuman

TSL 5 BASIC

Gene TRIM3, Length 2,137 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-215ENST00000639856 ZNF496Q96IT1 587 aaPredicted RBP18.76■□□□□ 0.59
TRIM3-215ENST00000639856 PXDNLA1KZ92 1463 aa18.76■□□□□ 0.59
TRIM3-215ENST00000639856 DBF4Q9UBU7 674 aaPredicted RBP18.76■□□□□ 0.59
TRIM3-215ENST00000639856 RBM25P49756 843 aaKnown RBP18.74■□□□□ 0.59
TRIM3-215ENST00000639856 CHMP4AQ9BY43 222 aa18.74■□□□□ 0.59
TRIM3-215ENST00000639856 ADCY9O60503 1353 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 PI4KAP2A4QPH2 592 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 ADAMTS2O95450 1211 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 PI4KAP1Q8N8J0 262 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 PLCH1Q4KWH8 1693 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 GLI3P10071 1580 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 TOM1O60784 492 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 PLEKHM2Q8IWE5 1019 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 TTC5Q8N0Z6 440 aa18.73■□□□□ 0.59
TRIM3-215ENST00000639856 TOGARAM1Q9Y4F4 1720 aa18.72■□□□□ 0.59
TRIM3-215ENST00000639856 PDIA6Q15084 440 aa18.71■□□□□ 0.59
TRIM3-215ENST00000639856 NKX1-1Q15270 411 aaPredicted RBP18.71■□□□□ 0.59
TRIM3-215ENST00000639856 DNAAF4Q8WXU2 420 aa18.71■□□□□ 0.59
TRIM3-215ENST00000639856 ANTXR1Q9H6X2 564 aa18.71■□□□□ 0.59
TRIM3-215ENST00000639856 HMMRO75330 724 aa18.7■□□□□ 0.58
TRIM3-215ENST00000639856 TBC1D9Q6ZT07 1266 aa18.7■□□□□ 0.58
TRIM3-215ENST00000639856 USP44Q9H0E7 712 aa18.7■□□□□ 0.58
TRIM3-215ENST00000639856 SLKQ9H2G2 1235 aaPredicted RBP18.7■□□□□ 0.58
TRIM3-215ENST00000639856 GNAI2P04899 355 aa18.7■□□□□ 0.58
TRIM3-215ENST00000639856 USP16Q9Y5T5 823 aa18.7■□□□□ 0.58
TRIM3-215ENST00000639856 DISP2A7MBM2 1401 aa18.69■□□□□ 0.58
TRIM3-215ENST00000639856 NUTM2BA6NNL0 878 aaPredicted RBP18.69■□□□□ 0.58
TRIM3-215ENST00000639856 NUTM2EB1AL46 878 aaPredicted RBP18.69■□□□□ 0.58
TRIM3-215ENST00000639856 ERVV-2B6SEH9 535 aa18.69■□□□□ 0.58
TRIM3-215ENST00000639856 GSPT1P15170 499 aaKnown RBP18.69■□□□□ 0.58
TRIM3-215ENST00000639856 BEND3Q5T5X7 828 aa18.69■□□□□ 0.58
TRIM3-215ENST00000639856 NUTM2AQ8IVF1 878 aaPredicted RBP18.69■□□□□ 0.58
TRIM3-215ENST00000639856 FMNL2Q96PY5 1086 aa18.69■□□□□ 0.58
TRIM3-215ENST00000639856 SRCIN1Q9C0H9 1055 aa18.69■□□□□ 0.58
TRIM3-215ENST00000639856 DDX21Q9NR30 783 aaKnown RBP eCLIP18.69■□□□□ 0.58
TRIM3-215ENST00000639856 FRAT2O75474 233 aaPredicted RBP18.68■□□□□ 0.58
TRIM3-215ENST00000639856 GNAI3P08754 354 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 SNRPA1P09661 255 aaKnown RBP18.68■□□□□ 0.58
TRIM3-215ENST00000639856 HYPKQ9NX55 129 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 UBR2Q8IWV8 1755 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 PAPPAQ13219 1627 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 UBAP1LF5GYI3 381 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 CDC45O75419 566 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 PIP4K2AP48426 406 aaPredicted RBP18.68■□□□□ 0.58
TRIM3-215ENST00000639856 MAP3K2Q9Y2U5 619 aa18.68■□□□□ 0.58
TRIM3-215ENST00000639856 LRRFIP2Q9Y608 721 aaKnown RBP18.68■□□□□ 0.58
TRIM3-215ENST00000639856 NRAPQ86VF7 1730 aa18.67■□□□□ 0.58
TRIM3-215ENST00000639856 MYL6BP14649 208 aa18.67■□□□□ 0.58
TRIM3-215ENST00000639856 AIMP1Q12904 312 aaKnown RBP18.67■□□□□ 0.58
TRIM3-215ENST00000639856 TTC22Q5TAA0 569 aa18.67■□□□□ 0.58
TRIM3-215ENST00000639856 C16orf71Q8IYS4 520 aaPredicted RBP18.67■□□□□ 0.58
TRIM3-215ENST00000639856 WNK3Q9BYP7 1800 aa18.67■□□□□ 0.58
TRIM3-215ENST00000639856 LAMB4A4D0S4 1761 aa18.67■□□□□ 0.58
TRIM3-215ENST00000639856 KSR2Q6VAB6 950 aa18.66■□□□□ 0.58
TRIM3-215ENST00000639856 KCPQ6ZWJ8 1503 aa18.66■□□□□ 0.58
TRIM3-215ENST00000639856 UBTFL1P0CB47 393 aaPredicted RBP18.65■□□□□ 0.58
TRIM3-215ENST00000639856 APBB1O00213 710 aa18.65■□□□□ 0.58
TRIM3-215ENST00000639856 EIF5BO60841 1220 aaKnown RBP18.65■□□□□ 0.58
TRIM3-215ENST00000639856 PNMA6EA0A0J9YXQ4 647 aa18.64■□□□□ 0.57
TRIM3-215ENST00000639856 NBPF7P0C2Y1 421 aaPredicted RBP18.64■□□□□ 0.57
TRIM3-215ENST00000639856 OTUD7AQ8TE49 926 aaPredicted RBP18.64■□□□□ 0.57
TRIM3-215ENST00000639856 SMARCA5O60264 1052 aaPredicted RBP18.64■□□□□ 0.57
TRIM3-215ENST00000639856 LRP10Q7Z4F1 713 aa18.64■□□□□ 0.57
TRIM3-215ENST00000639856 HSCBQ8IWL3 235 aa18.64■□□□□ 0.57
TRIM3-215ENST00000639856 SNX21Q969T3 373 aa18.64■□□□□ 0.57
TRIM3-215ENST00000639856 XAGE3Q8WTP9 111 aa18.63■□□□□ 0.57
TRIM3-215ENST00000639856 ITGB4P16144 1822 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 PTCD1O75127 700 aaKnown RBP18.62■□□□□ 0.57
TRIM3-215ENST00000639856 CWF19L2Q2TBE0 894 aaKnown RBP18.62■□□□□ 0.57
TRIM3-215ENST00000639856 TNS2Q63HR2 1409 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 KAT6BQ8WYB5 2073 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 ATP8B2P98198 1209 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 COPS6Q7L5N1 327 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 KIF2CQ99661 725 aa18.62■□□□□ 0.57
TRIM3-215ENST00000639856 TMOD3Q9NYL9 352 aa18.61■□□□□ 0.57
TRIM3-215ENST00000639856 DDX58O95786 925 aaKnown RBP18.61■□□□□ 0.57
TRIM3-215ENST00000639856 GSE1Q14687 1217 aa18.61■□□□□ 0.57
TRIM3-215ENST00000639856 EXOC6BQ9Y2D4 811 aa18.61■□□□□ 0.57
TRIM3-215ENST00000639856 SPATA31A1Q5TZJ5 1347 aa18.6■□□□□ 0.57
TRIM3-215ENST00000639856 PIGBQ92521 554 aa18.6■□□□□ 0.57
TRIM3-215ENST00000639856 OSBPL3Q9H4L5 887 aa18.6■□□□□ 0.57
TRIM3-215ENST00000639856 SDSP20132 328 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 RIC3Q7Z5B4 369 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 SPRYD3Q8NCJ5 442 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 NBPF26B4DH59 902 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 EXOC5O00471 708 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 ALDH1L1O75891 902 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 NBPF14Q5TI25 921 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 NBPF10Q6P3W6 841 aaKnown RBP18.59■□□□□ 0.57
TRIM3-215ENST00000639856 NBPF15Q8N660 670 aa18.59■□□□□ 0.57
TRIM3-215ENST00000639856 ASAP1Q9ULH1 1129 aa18.58■□□□□ 0.57
TRIM3-215ENST00000639856 NWD2Q9ULI1 1742 aa18.58■□□□□ 0.57
TRIM3-215ENST00000639856 SLIT2O94813 1529 aa18.58■□□□□ 0.57
TRIM3-215ENST00000639856 PPP1R42Q7Z4L9 355 aa18.58■□□□□ 0.56
TRIM3-215ENST00000639856 LINS1Q8NG48 757 aa18.58■□□□□ 0.56
TRIM3-215ENST00000639856 ARFGEF2Q9Y6D5 1785 aa18.57■□□□□ 0.56
TRIM3-215ENST00000639856 IGKV5-2P06315 115 aa18.57■□□□□ 0.56
TRIM3-215ENST00000639856 C9orf78Q9NZ63 289 aaPredicted RBP18.57■□□□□ 0.56
TRIM3-215ENST00000639856 CHMP5Q9NZZ3 219 aa18.57■□□□□ 0.56
TRIM3-215ENST00000639856 PDE1AP54750 535 aa18.56■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms