RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 NFIXQ14938 502 aa26.34■■□□□ 1.81
CLN3-262ENST00000637699 RRAGCQ9HB90 399 aa26.34■■□□□ 1.81
CLN3-262ENST00000637699 NARFQ9UHQ1 456 aa26.34■■□□□ 1.81
CLN3-262ENST00000637699 MTHFSDQ2M296 383 aaKnown RBP26.33■■□□□ 1.81
CLN3-262ENST00000637699 ZBTB1Q9Y2K1 713 aa26.33■■□□□ 1.81
CLN3-262ENST00000637699 HTRA3P83110 453 aa26.32■■□□□ 1.8
CLN3-262ENST00000637699 CCER1Q8TC90 406 aaPredicted RBP26.32■■□□□ 1.8
CLN3-262ENST00000637699 COL15A1P39059 1388 aa26.32■■□□□ 1.8
CLN3-262ENST00000637699 MRC1P22897 1456 aa26.31■■□□□ 1.8
CLN3-262ENST00000637699 RASSF7Q02833 373 aa26.3■■□□□ 1.8
CLN3-262ENST00000637699 BCL2L12Q9HB09 334 aa26.3■■□□□ 1.8
CLN3-262ENST00000637699 SBF1O95248 1867 aa26.3■■□□□ 1.8
CLN3-262ENST00000637699 SERPINB2P05120 415 aa26.29■■□□□ 1.8
CLN3-262ENST00000637699 CANXP27824 592 aaKnown RBP26.29■■□□□ 1.8
CLN3-262ENST00000637699 FSTL1Q12841 308 aa26.29■■□□□ 1.8
CLN3-262ENST00000637699 AFDNP55196 1824 aaKnown RBP26.28■■□□□ 1.8
CLN3-262ENST00000637699 VIRMAQ69YN4 1812 aaKnown RBP26.28■■□□□ 1.8
CLN3-262ENST00000637699 DIAPH1O60610 1272 aaKnown RBP26.28■■□□□ 1.8
CLN3-262ENST00000637699 KIF7Q2M1P5 1343 aa26.28■■□□□ 1.8
CLN3-262ENST00000637699 WDR90Q96KV7 1748 aa26.28■■□□□ 1.8
CLN3-262ENST00000637699 CC2D1BQ5T0F9 858 aaKnown RBP26.27■■□□□ 1.8
CLN3-262ENST00000637699 VSIG10Q8N0Z9 540 aa26.27■■□□□ 1.8
CLN3-262ENST00000637699 BICDL1Q6ZP65 573 aa26.26■■□□□ 1.79
CLN3-262ENST00000637699 C2CD5Q86YS7 1000 aa26.25■■□□□ 1.79
CLN3-262ENST00000637699 TTC5Q8N0Z6 440 aa26.24■■□□□ 1.79
CLN3-262ENST00000637699 TTLL6Q8N841 843 aa26.24■■□□□ 1.79
CLN3-262ENST00000637699 KLRG1Q96E93 195 aa26.24■■□□□ 1.79
CLN3-262ENST00000637699 STARD3NLO95772 234 aa26.23■■□□□ 1.79
CLN3-262ENST00000637699 LMNB1P20700 586 aa26.23■■□□□ 1.79
CLN3-262ENST00000637699 NRXN2Q9P2S2 1712 aa26.22■■□□□ 1.79
CLN3-262ENST00000637699 H0YIN7 160 aa26.22■■□□□ 1.79
CLN3-262ENST00000637699 PER1O15534 1290 aaPredicted RBP26.22■■□□□ 1.79
CLN3-262ENST00000637699 PRELPP51888 382 aa26.22■■□□□ 1.79
CLN3-262ENST00000637699 CNGB1Q14028 1251 aaPredicted RBP26.22■■□□□ 1.79
CLN3-262ENST00000637699 TNRC6CQ9HCJ0 1690 aaKnown RBP26.22■■□□□ 1.79
CLN3-262ENST00000637699 CARMIL3Q8ND23 1372 aa26.21■■□□□ 1.79
CLN3-262ENST00000637699 EIF5P55010 431 aaKnown RBP26.21■■□□□ 1.79
CLN3-262ENST00000637699 ZC3H4Q9UPT8 1303 aaKnown RBP26.2■■□□□ 1.79
CLN3-262ENST00000637699 SMC1BQ8NDV3 1235 aa26.2■■□□□ 1.78
CLN3-262ENST00000637699 A0A087WZG4 1122 aa26.19■■□□□ 1.78
CLN3-262ENST00000637699 U2SURPO15042 1029 aaKnown RBP26.19■■□□□ 1.78
CLN3-262ENST00000637699 TEFQ10587 303 aa26.19■■□□□ 1.78
CLN3-262ENST00000637699 ZNF496Q96IT1 587 aaPredicted RBP26.19■■□□□ 1.78
CLN3-262ENST00000637699 ZNF330Q9Y3S2 320 aaPredicted RBP26.19■■□□□ 1.78
CLN3-262ENST00000637699 UBR2Q8IWV8 1755 aa26.19■■□□□ 1.78
CLN3-262ENST00000637699 GLTPD2A6NH11 291 aa26.18■■□□□ 1.78
CLN3-262ENST00000637699 TBC1D9BQ66K14 1250 aa26.18■■□□□ 1.78
CLN3-262ENST00000637699 IL17REQ8NFR9 667 aa26.18■■□□□ 1.78
CLN3-262ENST00000637699 DLEC1Q9Y238 1755 aa26.18■■□□□ 1.78
CLN3-262ENST00000637699 VEGFAP15692 232 aaPredicted RBP26.17■■□□□ 1.78
CLN3-262ENST00000637699 JMYQ8N9B5 988 aa26.17■■□□□ 1.78
CLN3-262ENST00000637699 GNAT3A8MTJ3 354 aa26.16■■□□□ 1.78
CLN3-262ENST00000637699 NFKBIEO00221 500 aa26.16■■□□□ 1.78
CLN3-262ENST00000637699 ZNF790Q6PG37 636 aa26.16■■□□□ 1.78
CLN3-262ENST00000637699 CCDC24Q8N4L8 307 aa26.16■■□□□ 1.78
CLN3-262ENST00000637699 ZNF622Q969S3 477 aaKnown RBP eCLIP26.16■■□□□ 1.78
CLN3-262ENST00000637699 TBC1D2BQ9UPU7 963 aa26.16■■□□□ 1.78
CLN3-262ENST00000637699 ZNF219Q9P2Y4 722 aaPredicted RBP26.15■■□□□ 1.78
CLN3-262ENST00000637699 HEG1Q9ULI3 1381 aa26.15■■□□□ 1.78
CLN3-262ENST00000637699 GAS2L2Q8NHY3 880 aa26.14■■□□□ 1.78
CLN3-262ENST00000637699 TEX13AQ9BXU3 409 aaPredicted RBP26.14■■□□□ 1.78
CLN3-262ENST00000637699 CCDC88AQ3V6T2 1871 aa26.14■■□□□ 1.78
CLN3-262ENST00000637699 PCNTO95613 3336 aa26.13■■□□□ 1.77
CLN3-262ENST00000637699 PDE6BP35913 854 aa26.12■■□□□ 1.77
CLN3-262ENST00000637699 PRR5LQ6MZQ0 368 aa26.12■■□□□ 1.77
CLN3-262ENST00000637699 BRIP1Q9BX63 1249 aa26.12■■□□□ 1.77
CLN3-262ENST00000637699 COL3A1P02461 1466 aaPredicted RBP26.11■■□□□ 1.77
CLN3-262ENST00000637699 C21orf2O43822 256 aa26.11■■□□□ 1.77
CLN3-262ENST00000637699 A1BGP04217 495 aa26.11■■□□□ 1.77
CLN3-262ENST00000637699 IL6STP40189 918 aaPredicted RBP26.11■■□□□ 1.77
CLN3-262ENST00000637699 COL13A1Q5TAT6 717 aaPredicted RBP26.11■■□□□ 1.77
CLN3-262ENST00000637699 NPM2Q86SE8 214 aaKnown RBP26.1■■□□□ 1.77
CLN3-262ENST00000637699 FMNL2Q96PY5 1086 aa26.1■■□□□ 1.77
CLN3-262ENST00000637699 TIAM2Q8IVF5 1701 aa26.1■■□□□ 1.77
CLN3-262ENST00000637699 ANKRD31Q8N7Z5 1873 aa26.09■■□□□ 1.77
CLN3-262ENST00000637699 PDZRN3Q9UPQ7 1066 aa26.09■■□□□ 1.77
CLN3-262ENST00000637699 NPHP1O15259 732 aa26.08■■□□□ 1.77
CLN3-262ENST00000637699 DPY19L2Q6NUT2 758 aa26.08■■□□□ 1.77
CLN3-262ENST00000637699 SETDB2Q96T68 719 aa26.08■■□□□ 1.77
CLN3-262ENST00000637699 POTECB2RU33 542 aa26.07■■□□□ 1.76
CLN3-262ENST00000637699 KCNQ3O43525 872 aa26.07■■□□□ 1.76
CLN3-262ENST00000637699 ERFEQ4G0M1 354 aa26.07■■□□□ 1.76
CLN3-262ENST00000637699 SCN7AQ01118 1682 aa26.06■■□□□ 1.76
CLN3-262ENST00000637699 SIPA1L3O60292 1781 aaPredicted RBP26.06■■□□□ 1.76
CLN3-262ENST00000637699 CAMTA2O94983 1202 aa26.06■■□□□ 1.76
CLN3-262ENST00000637699 CNBD1Q8NA66 436 aa26.06■■□□□ 1.76
CLN3-262ENST00000637699 PHACTR3Q96KR7 559 aa26.06■■□□□ 1.76
CLN3-262ENST00000637699 NPC1L1Q9UHC9 1359 aa26.06■■□□□ 1.76
CLN3-262ENST00000637699 BTBD11A6QL63 1104 aa26.05■■□□□ 1.76
CLN3-262ENST00000637699 PRKAR2BP31323 418 aa26.04■■□□□ 1.76
CLN3-262ENST00000637699 COL11A2P13942 1736 aaPredicted RBP26.04■■□□□ 1.76
CLN3-262ENST00000637699 PIP4K2AP48426 406 aaPredicted RBP26.03■■□□□ 1.76
CLN3-262ENST00000637699 DZIP3Q86Y13 1208 aaKnown RBP26.03■■□□□ 1.76
CLN3-262ENST00000637699 CEMIPQ8WUJ3 1361 aa26.03■■□□□ 1.76
CLN3-262ENST00000637699 ST5P78524 1137 aa26.02■■□□□ 1.76
CLN3-262ENST00000637699 CNKSR1Q969H4 720 aa26.02■■□□□ 1.76
CLN3-262ENST00000637699 TAOK3Q9H2K8 898 aa26.02■■□□□ 1.76
CLN3-262ENST00000637699 USP16Q9Y5T5 823 aa26.02■■□□□ 1.76
CLN3-262ENST00000637699 FER1L6Q2WGJ9 1857 aa26.01■■□□□ 1.75
CLN3-262ENST00000637699 SRGNP10124 158 aa26■■□□□ 1.75
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms