RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 PRIM1P49642 420 aaKnown RBP23.38■■□□□ 1.33
CLN3-254ENST00000637050 PHAXQ9H814 394 aaKnown RBP23.38■■□□□ 1.33
CLN3-254ENST00000637050 ATG3Q9NT62 314 aa23.38■■□□□ 1.33
CLN3-254ENST00000637050 ASAP1Q9ULH1 1129 aa23.38■■□□□ 1.33
CLN3-254ENST00000637050 FKBP5Q13451 457 aaPredicted RBP23.37■■□□□ 1.33
CLN3-254ENST00000637050 DDX21Q9NR30 783 aaKnown RBP eCLIP23.37■■□□□ 1.33
CLN3-254ENST00000637050 USP16Q9Y5T5 823 aa23.37■■□□□ 1.33
CLN3-254ENST00000637050 PDIA6Q15084 440 aa23.36■■□□□ 1.33
CLN3-254ENST00000637050 PROSER3Q2NL68 480 aa23.35■■□□□ 1.33
CLN3-254ENST00000637050 QTRT2Q9H974 415 aaKnown RBP23.35■■□□□ 1.33
CLN3-254ENST00000637050 ZBTB40Q9NUA8 1239 aa23.35■■□□□ 1.33
CLN3-254ENST00000637050 HYPKQ9NX55 129 aa23.35■■□□□ 1.33
CLN3-254ENST00000637050 A0A0G2JS52 829 aa23.35■■□□□ 1.33
CLN3-254ENST00000637050 ZBTB7BO15156 539 aaPredicted RBP23.35■■□□□ 1.33
CLN3-254ENST00000637050 PTCD1O75127 700 aaKnown RBP23.35■■□□□ 1.33
CLN3-254ENST00000637050 ANXA1P04083 346 aa23.35■■□□□ 1.33
CLN3-254ENST00000637050 SYTL4Q96C24 671 aaPredicted RBP23.35■■□□□ 1.33
CLN3-254ENST00000637050 CHMP4BQ9H444 224 aaKnown RBP23.35■■□□□ 1.33
CLN3-254ENST00000637050 F6X3S4 739 aa23.34■■□□□ 1.33
CLN3-254ENST00000637050 VSIG10Q8N0Z9 540 aa23.33■■□□□ 1.33
CLN3-254ENST00000637050 FBXO41Q8TF61 875 aa23.33■■□□□ 1.33
CLN3-254ENST00000637050 PXDNLA1KZ92 1463 aa23.33■■□□□ 1.32
CLN3-254ENST00000637050 ERBB4Q15303 1308 aa23.32■■□□□ 1.32
CLN3-254ENST00000637050 ACSBG1Q96GR2 724 aa23.32■■□□□ 1.32
CLN3-254ENST00000637050 PCDHB15Q9Y5E8 787 aa23.32■■□□□ 1.32
CLN3-254ENST00000637050 N4BP2Q86UW6 1770 aaPredicted RBP23.31■■□□□ 1.32
CLN3-254ENST00000637050 CCT4P50991 539 aaKnown RBP23.31■■□□□ 1.32
CLN3-254ENST00000637050 KDM2BQ8NHM5 1336 aa23.31■■□□□ 1.32
CLN3-254ENST00000637050 LRP10Q7Z4F1 713 aa23.3■■□□□ 1.32
CLN3-254ENST00000637050 SLC4A10Q6U841 1118 aa23.29■■□□□ 1.32
CLN3-254ENST00000637050 TEX13AQ9BXU3 409 aaPredicted RBP23.29■■□□□ 1.32
CLN3-254ENST00000637050 SEPT12Q8IYM1 358 aa23.28■■□□□ 1.32
CLN3-254ENST00000637050 ADCY9O60503 1353 aa23.28■■□□□ 1.32
CLN3-254ENST00000637050 KAT6BQ8WYB5 2073 aa23.27■■□□□ 1.32
CLN3-254ENST00000637050 PI4KAP2A4QPH2 592 aa23.27■■□□□ 1.32
CLN3-254ENST00000637050 ZNF772Q68DY9 489 aaPredicted RBP23.27■■□□□ 1.32
CLN3-254ENST00000637050 CENPQQ7L2Z9 268 aaPredicted RBP23.27■■□□□ 1.32
CLN3-254ENST00000637050 PI4KAP1Q8N8J0 262 aa23.27■■□□□ 1.32
CLN3-254ENST00000637050 RBM42Q9BTD8 480 aaKnown RBP23.27■■□□□ 1.32
CLN3-254ENST00000637050 MYL6BP14649 208 aa23.26■■□□□ 1.31
CLN3-254ENST00000637050 DNAAF4Q8WXU2 420 aa23.26■■□□□ 1.31
CLN3-254ENST00000637050 NBPF26B4DH59 902 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 KCNQ2O43526 872 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 NBPF14Q5TI25 921 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 NBPF10Q6P3W6 841 aaKnown RBP23.25■■□□□ 1.31
CLN3-254ENST00000637050 KSR2Q6VAB6 950 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 NBPF15Q8N660 670 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 SLC4A9Q96Q91 983 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 DDX58O95786 925 aaKnown RBP23.25■■□□□ 1.31
CLN3-254ENST00000637050 IGHDP01880 384 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 DNAJC10Q8IXB1 793 aa23.25■■□□□ 1.31
CLN3-254ENST00000637050 ATP10DQ9P241 1426 aa23.24■■□□□ 1.31
CLN3-254ENST00000637050 XAGE3Q8WTP9 111 aa23.24■■□□□ 1.31
CLN3-254ENST00000637050 A1BGP04217 495 aa23.23■■□□□ 1.31
CLN3-254ENST00000637050 PIP4K2AP48426 406 aaPredicted RBP23.23■■□□□ 1.31
CLN3-254ENST00000637050 COPS6Q7L5N1 327 aa23.23■■□□□ 1.31
CLN3-254ENST00000637050 TJP1Q07157 1748 aa23.23■■□□□ 1.31
CLN3-254ENST00000637050 NHSQ6T4R5 1651 aa23.23■■□□□ 1.31
CLN3-254ENST00000637050 AIMP1Q12904 312 aaKnown RBP23.22■■□□□ 1.31
CLN3-254ENST00000637050 SMARCC1Q92922 1105 aaPredicted RBP23.22■■□□□ 1.31
CLN3-254ENST00000637050 MAP3K2Q9Y2U5 619 aa23.22■■□□□ 1.31
CLN3-254ENST00000637050 CICQ96RK0 1608 aaPredicted RBP23.22■■□□□ 1.31
CLN3-254ENST00000637050 STARD3NLO95772 234 aa23.22■■□□□ 1.31
CLN3-254ENST00000637050 BEND3Q5T5X7 828 aa23.22■■□□□ 1.31
CLN3-254ENST00000637050 MEIS3Q99687 375 aa23.22■■□□□ 1.31
CLN3-254ENST00000637050 RWDD1Q9H446 243 aaPredicted RBP23.22■■□□□ 1.31
CLN3-254ENST00000637050 HDAC1Q13547 482 aaPredicted RBP23.21■■□□□ 1.31
CLN3-254ENST00000637050 SRCIN1Q9C0H9 1055 aa23.21■■□□□ 1.31
CLN3-254ENST00000637050 PALLDQ8WX93 1383 aa23.21■■□□□ 1.31
CLN3-254ENST00000637050 CYP19A1P11511 503 aaPredicted RBP23.2■■□□□ 1.3
CLN3-254ENST00000637050 RBM6P78332 1123 aaKnown RBP23.2■■□□□ 1.3
CLN3-254ENST00000637050 FAM182BQ5T319 152 aa23.19■■□□□ 1.3
CLN3-254ENST00000637050 ANKRD13DQ6ZTN6 518 aa23.19■■□□□ 1.3
CLN3-254ENST00000637050 C1orf115Q9H7X2 142 aa23.19■■□□□ 1.3
CLN3-254ENST00000637050 ZNF831Q5JPB2 1677 aa23.18■■□□□ 1.3
CLN3-254ENST00000637050 LOC102724428A0A0B4J2F2 783 aa23.18■■□□□ 1.3
CLN3-254ENST00000637050 SIK1P57059 783 aa23.18■■□□□ 1.3
CLN3-254ENST00000637050 SBF2Q86WG5 1849 aa23.18■■□□□ 1.3
CLN3-254ENST00000637050 ALDH1L1O75891 902 aa23.17■■□□□ 1.3
CLN3-254ENST00000637050 GNAI3P08754 354 aa23.17■■□□□ 1.3
CLN3-254ENST00000637050 RIC3Q7Z5B4 369 aa23.17■■□□□ 1.3
CLN3-254ENST00000637050 USP44Q9H0E7 712 aa23.17■■□□□ 1.3
CLN3-254ENST00000637050 BRWD3Q6RI45 1802 aa23.16■■□□□ 1.3
CLN3-254ENST00000637050 PTF1AQ7RTS3 328 aa23.16■■□□□ 1.3
CLN3-254ENST00000637050 PLBD2Q8NHP8 589 aa23.16■■□□□ 1.3
CLN3-254ENST00000637050 BTAF1O14981 1849 aa23.16■■□□□ 1.3
CLN3-254ENST00000637050 IBTKQ9P2D0 1353 aaPredicted RBP23.16■■□□□ 1.3
CLN3-254ENST00000637050 LINS1Q8NG48 757 aa23.16■■□□□ 1.3
CLN3-254ENST00000637050 ATP6V1AP38606 617 aa23.15■■□□□ 1.3
CLN3-254ENST00000637050 METTL22Q9BUU2 404 aaPredicted RBP23.15■■□□□ 1.3
CLN3-254ENST00000637050 ARFGEF2Q9Y6D5 1785 aa23.14■■□□□ 1.3
CLN3-254ENST00000637050 KRT27Q7Z3Y8 459 aa23.14■■□□□ 1.29
CLN3-254ENST00000637050 SIRT2Q8IXJ6 389 aa23.14■■□□□ 1.29
CLN3-254ENST00000637050 TTLL7Q6ZT98 887 aa23.13■■□□□ 1.29
CLN3-254ENST00000637050 RPAP2Q8IXW5 612 aaPredicted RBP23.13■■□□□ 1.29
CLN3-254ENST00000637050 GNAI2P04899 355 aa23.13■■□□□ 1.29
CLN3-254ENST00000637050 ITPK1Q13572 414 aa23.13■■□□□ 1.29
CLN3-254ENST00000637050 ANKRD44Q8N8A2 993 aa23.13■■□□□ 1.29
CLN3-254ENST00000637050 NUP188Q5SRE5 1749 aa23.12■■□□□ 1.29
CLN3-254ENST00000637050 RREB1Q92766 1687 aa23.12■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms