RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 TMOD3Q9NYL9 352 aa21.27■■□□□ 1
CLN3-252ENST00000636907 PDIA6Q15084 440 aa21.26■□□□□ 0.99
CLN3-252ENST00000636907 FNBP4Q8N3X1 1017 aaPredicted RBP21.26■□□□□ 0.99
CLN3-252ENST00000636907 DDX21Q9NR30 783 aaKnown RBP eCLIP21.26■□□□□ 0.99
CLN3-252ENST00000636907 LAMB4A4D0S4 1761 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 DDB1Q16531 1140 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 MEIS3Q99687 375 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 HYPKQ9NX55 129 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 USP16Q9Y5T5 823 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 ITGB4P16144 1822 aa21.25■□□□□ 0.99
CLN3-252ENST00000636907 VPS72Q15906 364 aa21.24■□□□□ 0.99
CLN3-252ENST00000636907 PIGBQ92521 554 aa21.23■□□□□ 0.99
CLN3-252ENST00000636907 ADCY9O60503 1353 aa21.22■□□□□ 0.99
CLN3-252ENST00000636907 PI4KAP2A4QPH2 592 aa21.22■□□□□ 0.99
CLN3-252ENST00000636907 PI4KAP1Q8N8J0 262 aa21.22■□□□□ 0.99
CLN3-252ENST00000636907 SIRT2Q8IXJ6 389 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 DNAAF4Q8WXU2 420 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 ATP10DQ9P241 1426 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 PTCD1O75127 700 aaKnown RBP21.21■□□□□ 0.99
CLN3-252ENST00000636907 SMC5Q8IY18 1101 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 USP21Q9UK80 565 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 PDZRN3Q9UPQ7 1066 aa21.21■□□□□ 0.99
CLN3-252ENST00000636907 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.21■□□□□ 0.99
CLN3-252ENST00000636907 BCL9O00512 1426 aa21.2■□□□□ 0.98
CLN3-252ENST00000636907 DOT1LQ8TEK3 1739 aa21.2■□□□□ 0.98
CLN3-252ENST00000636907 MYL6BP14649 208 aa21.2■□□□□ 0.98
CLN3-252ENST00000636907 RGS3P49796 1198 aa21.2■□□□□ 0.98
CLN3-252ENST00000636907 FAM98CQ17RN3 349 aaKnown RBP21.19■□□□□ 0.98
CLN3-252ENST00000636907 MARCH10Q8NA82 808 aaPredicted RBP21.19■□□□□ 0.98
CLN3-252ENST00000636907 ASAP1Q9ULH1 1129 aa21.19■□□□□ 0.98
CLN3-252ENST00000636907 BEND3Q5T5X7 828 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 MEX3CQ5U5Q3 659 aaKnown RBP21.18■□□□□ 0.98
CLN3-252ENST00000636907 KSR2Q6VAB6 950 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 LRP10Q7Z4F1 713 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 SRCIN1Q9C0H9 1055 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 ATG3Q9NT62 314 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 PIP4K2AP48426 406 aaPredicted RBP21.18■□□□□ 0.98
CLN3-252ENST00000636907 AIMP1Q12904 312 aaKnown RBP21.18■□□□□ 0.98
CLN3-252ENST00000636907 ANKRD44Q8N8A2 993 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 MAP3K2Q9Y2U5 619 aa21.18■□□□□ 0.98
CLN3-252ENST00000636907 CEP85Q6P2H3 762 aa21.17■□□□□ 0.98
CLN3-252ENST00000636907 SYTL4Q96C24 671 aaPredicted RBP21.17■□□□□ 0.98
CLN3-252ENST00000636907 DDX58O95786 925 aaKnown RBP21.16■□□□□ 0.98
CLN3-252ENST00000636907 GNAI3P08754 354 aa21.16■□□□□ 0.98
CLN3-252ENST00000636907 PRIM1P49642 420 aaKnown RBP21.16■□□□□ 0.98
CLN3-252ENST00000636907 RPAP2Q8IXW5 612 aaPredicted RBP21.16■□□□□ 0.98
CLN3-252ENST00000636907 XAGE3Q8WTP9 111 aa21.16■□□□□ 0.98
CLN3-252ENST00000636907 ERBB4Q15303 1308 aa21.15■□□□□ 0.98
CLN3-252ENST00000636907 COPS6Q7L5N1 327 aa21.15■□□□□ 0.98
CLN3-252ENST00000636907 USP44Q9H0E7 712 aa21.15■□□□□ 0.98
CLN3-252ENST00000636907 GNAI2P04899 355 aa21.15■□□□□ 0.98
CLN3-252ENST00000636907 NBPF26B4DH59 902 aa21.14■□□□□ 0.97
CLN3-252ENST00000636907 NBPF14Q5TI25 921 aa21.14■□□□□ 0.97
CLN3-252ENST00000636907 NBPF10Q6P3W6 841 aaKnown RBP21.14■□□□□ 0.97
CLN3-252ENST00000636907 NBPF15Q8N660 670 aa21.14■□□□□ 0.97
CLN3-252ENST00000636907 VSIG10Q8N0Z9 540 aa21.13■□□□□ 0.97
CLN3-252ENST00000636907 GCC1Q96CN9 775 aa21.13■□□□□ 0.97
CLN3-252ENST00000636907 AFF2P51816 1311 aa21.12■□□□□ 0.97
CLN3-252ENST00000636907 A1BGP04217 495 aa21.12■□□□□ 0.97
CLN3-252ENST00000636907 RIC3Q7Z5B4 369 aa21.12■□□□□ 0.97
CLN3-252ENST00000636907 ACSBG1Q96GR2 724 aa21.12■□□□□ 0.97
CLN3-252ENST00000636907 KAT6BQ8WYB5 2073 aa21.12■□□□□ 0.97
CLN3-252ENST00000636907 RBM42Q9BTD8 480 aaKnown RBP21.12■□□□□ 0.97
CLN3-252ENST00000636907 THSD7AQ9UPZ6 1657 aa21.11■□□□□ 0.97
CLN3-252ENST00000636907 ALDH1L1O75891 902 aa21.11■□□□□ 0.97
CLN3-252ENST00000636907 UBTFL1P0CB47 393 aaPredicted RBP21.11■□□□□ 0.97
CLN3-252ENST00000636907 NUCB1Q02818 461 aa21.11■□□□□ 0.97
CLN3-252ENST00000636907 DNAJC10Q8IXB1 793 aa21.11■□□□□ 0.97
CLN3-252ENST00000636907 RBM19Q9Y4C8 960 aaKnown RBP21.11■□□□□ 0.97
CLN3-252ENST00000636907 LRRFIP2Q9Y608 721 aaKnown RBP21.11■□□□□ 0.97
CLN3-252ENST00000636907 ANKRD13DQ6ZTN6 518 aa21.1■□□□□ 0.97
CLN3-252ENST00000636907 TEX13AQ9BXU3 409 aaPredicted RBP21.1■□□□□ 0.97
CLN3-252ENST00000636907 DCTPP1Q9H773 170 aa21.1■□□□□ 0.97
CLN3-252ENST00000636907 CWF19L2Q2TBE0 894 aaKnown RBP21.09■□□□□ 0.97
CLN3-252ENST00000636907 SLC4A9Q96Q91 983 aa21.09■□□□□ 0.97
CLN3-252ENST00000636907 A0A0G2JS52 829 aa21.09■□□□□ 0.97
CLN3-252ENST00000636907 NBPF7P0C2Y1 421 aaPredicted RBP21.09■□□□□ 0.97
CLN3-252ENST00000636907 PDE4AP27815 886 aa21.09■□□□□ 0.97
CLN3-252ENST00000636907 MYT1Q01538 1121 aa21.09■□□□□ 0.97
CLN3-252ENST00000636907 LINS1Q8NG48 757 aa21.09■□□□□ 0.97
CLN3-252ENST00000636907 CHD1LQ86WJ1 897 aa21.08■□□□□ 0.96
CLN3-252ENST00000636907 GJD4Q96KN9 370 aaPredicted RBP21.08■□□□□ 0.96
CLN3-252ENST00000636907 METTL22Q9BUU2 404 aaPredicted RBP21.08■□□□□ 0.96
CLN3-252ENST00000636907 ATRNO75882 1429 aa21.07■□□□□ 0.96
CLN3-252ENST00000636907 HMMRO75330 724 aa21.07■□□□□ 0.96
CLN3-252ENST00000636907 IGKV5-2P06315 115 aa21.07■□□□□ 0.96
CLN3-252ENST00000636907 ANKRD45Q5TZF3 282 aa21.07■□□□□ 0.96
CLN3-252ENST00000636907 ARFGEF2Q9Y6D5 1785 aa21.07■□□□□ 0.96
CLN3-252ENST00000636907 MYD88Q99836 296 aa21.06■□□□□ 0.96
CLN3-252ENST00000636907 LNPKQ9C0E8 428 aa21.06■□□□□ 0.96
CLN3-252ENST00000636907 TJP1Q07157 1748 aa21.06■□□□□ 0.96
CLN3-252ENST00000636907 STARD3NLO95772 234 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 ATP8B2P98198 1209 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 NEXNQ0ZGT2 675 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 TTLL7Q6ZT98 887 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 PLBD2Q8NHP8 589 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 BACH2Q9BYV9 841 aa21.05■□□□□ 0.96
CLN3-252ENST00000636907 C9orf78Q9NZ63 289 aaPredicted RBP21.05■□□□□ 0.96
CLN3-252ENST00000636907 PNMA6EA0A0J9YXQ4 647 aa21.04■□□□□ 0.96
CLN3-252ENST00000636907 NEURL1BA8MQ27 555 aa21.04■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 57 ms