RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 USPL1Q5W0Q7 1092 aa20.29■□□□□ 0.84
CLN3-249ENST00000636685 DPY19L2Q6NUT2 758 aa20.29■□□□□ 0.84
CLN3-249ENST00000636685 TTLL6Q8N841 843 aa20.29■□□□□ 0.84
CLN3-249ENST00000636685 NRXN2Q9P2S2 1712 aa20.28■□□□□ 0.84
CLN3-249ENST00000636685 VIRMAQ69YN4 1812 aaKnown RBP20.28■□□□□ 0.84
CLN3-249ENST00000636685 SLC24A1O60721 1099 aa20.28■□□□□ 0.84
CLN3-249ENST00000636685 LBX1P52954 281 aa20.27■□□□□ 0.84
CLN3-249ENST00000636685 INTS5Q6P9B9 1019 aaKnown RBP20.27■□□□□ 0.84
CLN3-249ENST00000636685 ABHD8Q96I13 439 aa20.27■□□□□ 0.84
CLN3-249ENST00000636685 CARD14Q9BXL6 1004 aa20.27■□□□□ 0.84
CLN3-249ENST00000636685 PCDH10Q9P2E7 1040 aa20.27■□□□□ 0.84
CLN3-249ENST00000636685 ZPR1O75312 459 aa20.26■□□□□ 0.83
CLN3-249ENST00000636685 HSP90AB1P08238 724 aaKnown RBP20.26■□□□□ 0.83
CLN3-249ENST00000636685 VEGFBP49765 207 aa20.26■□□□□ 0.83
CLN3-249ENST00000636685 NFIXQ14938 502 aa20.26■□□□□ 0.83
CLN3-249ENST00000636685 C2CD5Q86YS7 1000 aa20.26■□□□□ 0.83
CLN3-249ENST00000636685 EIF4A2Q14240 407 aaKnown RBP20.25■□□□□ 0.83
CLN3-249ENST00000636685 ERFEQ4G0M1 354 aa20.24■□□□□ 0.83
CLN3-249ENST00000636685 WBP1LQ9NX94 342 aa20.24■□□□□ 0.83
CLN3-249ENST00000636685 FER1L6Q2WGJ9 1857 aa20.24■□□□□ 0.83
CLN3-249ENST00000636685 ZNF530Q6P9A1 599 aaPredicted RBP20.23■□□□□ 0.83
CLN3-249ENST00000636685 ZNF219Q9P2Y4 722 aaPredicted RBP20.23■□□□□ 0.83
CLN3-249ENST00000636685 POLKQ9UBT6 870 aa20.23■□□□□ 0.83
CLN3-249ENST00000636685 PASKQ96RG2 1323 aa20.23■□□□□ 0.83
CLN3-249ENST00000636685 CARMIL3Q8ND23 1372 aa20.22■□□□□ 0.83
CLN3-249ENST00000636685 SERPINB2P05120 415 aa20.22■□□□□ 0.83
CLN3-249ENST00000636685 NFATC2IPQ8NCF5 419 aa20.22■□□□□ 0.83
CLN3-249ENST00000636685 H0YIN7 160 aa20.21■□□□□ 0.83
CLN3-249ENST00000636685 DDNO94850 711 aaPredicted RBP20.21■□□□□ 0.83
CLN3-249ENST00000636685 PLEKHO1Q53GL0 409 aaPredicted RBP20.21■□□□□ 0.83
CLN3-249ENST00000636685 SOS1Q07889 1333 aaPredicted RBP20.21■□□□□ 0.83
CLN3-249ENST00000636685 HSPA8P11142 646 aaKnown RBP20.2■□□□□ 0.82
CLN3-249ENST00000636685 MTHFSP49914 203 aa20.2■□□□□ 0.82
CLN3-249ENST00000636685 DNAJC10Q8IXB1 793 aa20.2■□□□□ 0.82
CLN3-249ENST00000636685 ANKRD31Q8N7Z5 1873 aa20.2■□□□□ 0.82
CLN3-249ENST00000636685 C21orf2O43822 256 aa20.19■□□□□ 0.82
CLN3-249ENST00000636685 BCL2L12Q9HB09 334 aa20.19■□□□□ 0.82
CLN3-249ENST00000636685 NARFQ9UHQ1 456 aa20.19■□□□□ 0.82
CLN3-249ENST00000636685 TMEM88BA6NKF7 163 aa20.18■□□□□ 0.82
CLN3-249ENST00000636685 MLLT1Q03111 559 aaPredicted RBP20.18■□□□□ 0.82
CLN3-249ENST00000636685 LDHDQ86WU2 507 aa20.17■□□□□ 0.82
CLN3-249ENST00000636685 ZNF622Q969S3 477 aaKnown RBP eCLIP20.17■□□□□ 0.82
CLN3-249ENST00000636685 COL11A2P13942 1736 aaPredicted RBP20.16■□□□□ 0.82
CLN3-249ENST00000636685 SCN4AP35499 1836 aa20.16■□□□□ 0.82
CLN3-249ENST00000636685 CACNA1SQ13698 1873 aa20.16■□□□□ 0.82
CLN3-249ENST00000636685 CCDC85CA6NKD9 419 aa20.16■□□□□ 0.82
CLN3-249ENST00000636685 COL15A1P39059 1388 aa20.16■□□□□ 0.82
CLN3-249ENST00000636685 SCN11AQ9UI33 1791 aa20.16■□□□□ 0.82
CLN3-249ENST00000636685 ITGBL1O95965 494 aaPredicted RBP20.15■□□□□ 0.82
CLN3-249ENST00000636685 TNNT2P45379 298 aaPredicted RBP20.15■□□□□ 0.82
CLN3-249ENST00000636685 AMOTQ4VCS5 1084 aa20.15■□□□□ 0.82
CLN3-249ENST00000636685 CYP19A1P11511 503 aaPredicted RBP20.14■□□□□ 0.81
CLN3-249ENST00000636685 C1orf141Q5JVX7 400 aa20.14■□□□□ 0.81
CLN3-249ENST00000636685 BICDL1Q6ZP65 573 aa20.14■□□□□ 0.81
CLN3-249ENST00000636685 TAF1DQ9H5J8 278 aaPredicted RBP20.14■□□□□ 0.81
CLN3-249ENST00000636685 RGS19P49795 217 aa20.13■□□□□ 0.81
CLN3-249ENST00000636685 TAOK3Q9H2K8 898 aa20.13■□□□□ 0.81
CLN3-249ENST00000636685 ZBTB1Q9Y2K1 713 aa20.13■□□□□ 0.81
CLN3-249ENST00000636685 SLX4Q8IY92 1834 aa20.13■□□□□ 0.81
CLN3-249ENST00000636685 LTBP3Q9NS15 1303 aa20.12■□□□□ 0.81
CLN3-249ENST00000636685 IQCA1LA6NCM1 817 aa20.12■□□□□ 0.81
CLN3-249ENST00000636685 CCDC24Q8N4L8 307 aa20.12■□□□□ 0.81
CLN3-249ENST00000636685 DEFB115Q30KQ5 88 aa20.11■□□□□ 0.81
CLN3-249ENST00000636685 CDCA8Q53HL2 280 aa20.11■□□□□ 0.81
CLN3-249ENST00000636685 EAPPQ56P03 285 aaPredicted RBP20.11■□□□□ 0.81
CLN3-249ENST00000636685 AEBP1Q8IUX7 1158 aa20.11■□□□□ 0.81
CLN3-249ENST00000636685 RASSF10A6NK89 507 aa20.1■□□□□ 0.81
CLN3-249ENST00000636685 L3MBTL3Q96JM7 780 aaPredicted RBP20.1■□□□□ 0.81
CLN3-249ENST00000636685 WDR33Q9C0J8 1336 aaKnown RBP20.09■□□□□ 0.81
CLN3-249ENST00000636685 MAP2K1Q02750 393 aaPredicted RBP20.09■□□□□ 0.81
CLN3-249ENST00000636685 CLEC11AQ9Y240 323 aa20.09■□□□□ 0.81
CLN3-249ENST00000636685 ADAMTSL1Q8N6G6 1762 aa20.08■□□□□ 0.81
CLN3-249ENST00000636685 PDE6BP35913 854 aa20.08■□□□□ 0.81
CLN3-249ENST00000636685 SLC39A6Q13433 755 aa20.08■□□□□ 0.81
CLN3-249ENST00000636685 BRIP1Q9BX63 1249 aa20.08■□□□□ 0.81
CLN3-249ENST00000636685 CANXP27824 592 aaKnown RBP20.07■□□□□ 0.8
CLN3-249ENST00000636685 TBC1D9BQ66K14 1250 aa20.07■□□□□ 0.8
CLN3-249ENST00000636685 PDZRN3Q9UPQ7 1066 aa20.07■□□□□ 0.8
CLN3-249ENST00000636685 ARFGEF2Q9Y6D5 1785 aa20.06■□□□□ 0.8
CLN3-249ENST00000636685 PDE4DIPQ5VU43 2346 aa20.06■□□□□ 0.8
CLN3-249ENST00000636685 PRR5LQ6MZQ0 368 aa20.06■□□□□ 0.8
CLN3-249ENST00000636685 MAP1SQ66K74 1059 aaPredicted RBP20.05■□□□□ 0.8
CLN3-249ENST00000636685 SLC52A2Q9HAB3 445 aa20.05■□□□□ 0.8
CLN3-249ENST00000636685 ABT1Q9ULW3 272 aaKnown RBP20.05■□□□□ 0.8
CLN3-249ENST00000636685 ZNF541Q9H0D2 1346 aa20.04■□□□□ 0.8
CLN3-249ENST00000636685 PRPF40BQ6NWY9 871 aaKnown RBP20.04■□□□□ 0.8
CLN3-249ENST00000636685 CNTROBQ8N137 903 aa20.04■□□□□ 0.8
CLN3-249ENST00000636685 LGR6Q9HBX8 967 aa20.04■□□□□ 0.8
CLN3-249ENST00000636685 HACL1Q9UJ83 578 aa20.04■□□□□ 0.8
CLN3-249ENST00000636685 EPHX2P34913 555 aa20.03■□□□□ 0.8
CLN3-249ENST00000636685 CNKSR1Q969H4 720 aa20.03■□□□□ 0.8
CLN3-249ENST00000636685 CFAP44Q96MT7 982 aa20.03■□□□□ 0.8
CLN3-249ENST00000636685 THSD7BQ9C0I4 1608 aa20.02■□□□□ 0.8
CLN3-249ENST00000636685 SULT6B1Q6IMI4 303 aa20.02■□□□□ 0.8
CLN3-249ENST00000636685 SCN7AQ01118 1682 aa20.01■□□□□ 0.79
CLN3-249ENST00000636685 EIF5P55010 431 aaKnown RBP20.01■□□□□ 0.79
CLN3-249ENST00000636685 SOGA3Q5TF21 947 aa20.01■□□□□ 0.79
CLN3-249ENST00000636685 STYK1Q6J9G0 422 aa20.01■□□□□ 0.79
CLN3-249ENST00000636685 TSKSQ9UJT2 592 aa20.01■□□□□ 0.79
CLN3-249ENST00000636685 TNRC18O15417 2968 aaPredicted RBP20.01■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 88.7 ms