RNA–Protein interactions for RNA: ENST00000635973.1

CLN3-243, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,084 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-243ENST00000635973 ZPR1O75312 459 aa23.88■■□□□ 1.41
CLN3-243ENST00000635973 INTS5Q6P9B9 1019 aaKnown RBP23.88■■□□□ 1.41
CLN3-243ENST00000635973 NFE2L2Q16236 605 aa23.87■■□□□ 1.41
CLN3-243ENST00000635973 RUNDC1Q96C34 613 aa23.87■■□□□ 1.41
CLN3-243ENST00000635973 SRP68Q9UHB9 627 aaKnown RBP23.87■■□□□ 1.41
CLN3-243ENST00000635973 USP42Q9H9J4 1324 aaKnown RBP23.86■■□□□ 1.41
CLN3-243ENST00000635973 ATP10DQ9P241 1426 aa23.86■■□□□ 1.41
CLN3-243ENST00000635973 CYP19A1P11511 503 aaPredicted RBP23.85■■□□□ 1.41
CLN3-243ENST00000635973 VSIG10Q8N0Z9 540 aa23.85■■□□□ 1.41
CLN3-243ENST00000635973 C10orf71Q711Q0 1435 aa23.84■■□□□ 1.41
CLN3-243ENST00000635973 KCPQ6ZWJ8 1503 aa23.84■■□□□ 1.41
CLN3-243ENST00000635973 PXDNLA1KZ92 1463 aa23.84■■□□□ 1.41
CLN3-243ENST00000635973 A0A0G2JLW4 131 aa23.84■■□□□ 1.41
CLN3-243ENST00000635973 FKBP8Q14318 412 aa23.84■■□□□ 1.41
CLN3-243ENST00000635973 PNISRQ8TF01 805 aaKnown RBP23.84■■□□□ 1.41
CLN3-243ENST00000635973 UBR2Q8IWV8 1755 aa23.83■■□□□ 1.41
CLN3-243ENST00000635973 BCS1LQ9Y276 419 aa23.83■■□□□ 1.41
CLN3-243ENST00000635973 SOS1Q07889 1333 aaPredicted RBP23.83■■□□□ 1.4
CLN3-243ENST00000635973 HTATSF1O43719 755 aaKnown RBP23.82■■□□□ 1.4
CLN3-243ENST00000635973 STARD3NLO95772 234 aa23.82■■□□□ 1.4
CLN3-243ENST00000635973 MCM10Q7L590 875 aa23.82■■□□□ 1.4
CLN3-243ENST00000635973 IL17REQ8NFR9 667 aa23.82■■□□□ 1.4
CLN3-243ENST00000635973 TMPOP42166 694 aaKnown RBP23.81■■□□□ 1.4
CLN3-243ENST00000635973 RIPK4P57078 832 aa23.81■■□□□ 1.4
CLN3-243ENST00000635973 USPL1Q5W0Q7 1092 aa23.81■■□□□ 1.4
CLN3-243ENST00000635973 RRP7AQ9Y3A4 280 aaKnown RBP23.81■■□□□ 1.4
CLN3-243ENST00000635973 KIAA1551Q9HCM1 1747 aa23.81■■□□□ 1.4
CLN3-243ENST00000635973 DPEP1P16444 411 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 CANXP27824 592 aaKnown RBP23.8■■□□□ 1.4
CLN3-243ENST00000635973 LMOD3Q0VAK6 560 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 DCTN1Q14203 1278 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 NEUROD2Q15784 382 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 GPBP1L1Q9HC44 474 aaPredicted RBP23.8■■□□□ 1.4
CLN3-243ENST00000635973 ZBTB1Q9Y2K1 713 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 DLG5Q8TDM6 1919 aa23.8■■□□□ 1.4
CLN3-243ENST00000635973 ADCY9O60503 1353 aa23.79■■□□□ 1.4
CLN3-243ENST00000635973 COL15A1P39059 1388 aa23.79■■□□□ 1.4
CLN3-243ENST00000635973 SIPA1L3O60292 1781 aaPredicted RBP23.79■■□□□ 1.4
CLN3-243ENST00000635973 ZNF790Q6PG37 636 aa23.79■■□□□ 1.4
CLN3-243ENST00000635973 FAM9BQ8IZU0 186 aa23.79■■□□□ 1.4
CLN3-243ENST00000635973 TEX13AQ9BXU3 409 aaPredicted RBP23.79■■□□□ 1.4
CLN3-243ENST00000635973 NARFQ9UHQ1 456 aa23.79■■□□□ 1.4
CLN3-243ENST00000635973 CEMIPQ8WUJ3 1361 aa23.78■■□□□ 1.4
CLN3-243ENST00000635973 ZNF526Q8TF50 670 aaPredicted RBP23.78■■□□□ 1.4
CLN3-243ENST00000635973 CCER2I3L3R5 266 aa23.77■■□□□ 1.4
CLN3-243ENST00000635973 DDR1Q08345 913 aa23.77■■□□□ 1.4
CLN3-243ENST00000635973 ARHGAP27Q6ZUM4 889 aa23.77■■□□□ 1.4
CLN3-243ENST00000635973 NPM2Q86SE8 214 aaKnown RBP23.77■■□□□ 1.4
CLN3-243ENST00000635973 BTBD11A6QL63 1104 aa23.76■■□□□ 1.39
CLN3-243ENST00000635973 APAF1O14727 1248 aa23.76■■□□□ 1.39
CLN3-243ENST00000635973 ZNF496Q96IT1 587 aaPredicted RBP23.76■■□□□ 1.39
CLN3-243ENST00000635973 FMNL2Q96PY5 1086 aa23.76■■□□□ 1.39
CLN3-243ENST00000635973 PIM2Q9P1W9 311 aa23.76■■□□□ 1.39
CLN3-243ENST00000635973 BRCA1P38398 1863 aaKnown RBP23.76■■□□□ 1.39
CLN3-243ENST00000635973 HEG1Q9ULI3 1381 aa23.76■■□□□ 1.39
CLN3-243ENST00000635973 A0A087WZG4 1122 aa23.75■■□□□ 1.39
CLN3-243ENST00000635973 POLRMTO00411 1230 aaKnown RBP23.75■■□□□ 1.39
CLN3-243ENST00000635973 TM4SF1P30408 202 aa23.75■■□□□ 1.39
CLN3-243ENST00000635973 ZNF330Q9Y3S2 320 aaPredicted RBP23.75■■□□□ 1.39
CLN3-243ENST00000635973 THUMPD2Q9BTF0 503 aaKnown RBP23.74■■□□□ 1.39
CLN3-243ENST00000635973 MIER1Q8N108 512 aa23.73■■□□□ 1.39
CLN3-243ENST00000635973 AFDNP55196 1824 aaKnown RBP23.73■■□□□ 1.39
CLN3-243ENST00000635973 ARFGEF1Q9Y6D6 1849 aa23.73■■□□□ 1.39
CLN3-243ENST00000635973 NFIXQ14938 502 aa23.72■■□□□ 1.39
CLN3-243ENST00000635973 DALRD3Q5D0E6 543 aaKnown RBP23.72■■□□□ 1.39
CLN3-243ENST00000635973 EIF5P55010 431 aaKnown RBP23.7■■□□□ 1.38
CLN3-243ENST00000635973 SERPINB2P05120 415 aa23.69■■□□□ 1.38
CLN3-243ENST00000635973 KCNA3P22001 575 aa23.69■■□□□ 1.38
CLN3-243ENST00000635973 CHRNA5P30532 468 aa23.69■■□□□ 1.38
CLN3-243ENST00000635973 TAF7Q15545 349 aaPredicted RBP23.69■■□□□ 1.38
CLN3-243ENST00000635973 BICDL1Q6ZP65 573 aa23.69■■□□□ 1.38
CLN3-243ENST00000635973 IL6STP40189 918 aaPredicted RBP23.68■■□□□ 1.38
CLN3-243ENST00000635973 BCL2L12Q9HB09 334 aa23.67■■□□□ 1.38
CLN3-243ENST00000635973 TRIM35Q9UPQ4 493 aa23.67■■□□□ 1.38
CLN3-243ENST00000635973 KCNQ3O43525 872 aa23.66■■□□□ 1.38
CLN3-243ENST00000635973 TBC1D2BQ9UPU7 963 aa23.66■■□□□ 1.38
CLN3-243ENST00000635973 NRXN2Q9P2S2 1712 aa23.65■■□□□ 1.38
CLN3-243ENST00000635973 A1BGP04217 495 aa23.65■■□□□ 1.38
CLN3-243ENST00000635973 MIS18AQ9NYP9 233 aa23.65■■□□□ 1.38
CLN3-243ENST00000635973 NPHP1O15259 732 aa23.64■■□□□ 1.37
CLN3-243ENST00000635973 TSPYL4Q9UJ04 414 aa23.64■■□□□ 1.37
CLN3-243ENST00000635973 CEP350Q5VT06 3117 aa23.63■■□□□ 1.37
CLN3-243ENST00000635973 SNRPA1P09661 255 aaKnown RBP23.63■■□□□ 1.37
CLN3-243ENST00000635973 LAS1LQ9Y4W2 734 aaKnown RBP23.63■■□□□ 1.37
CLN3-243ENST00000635973 SCN7AQ01118 1682 aa23.63■■□□□ 1.37
CLN3-243ENST00000635973 H0YIN7 160 aa23.62■■□□□ 1.37
CLN3-243ENST00000635973 CALD1Q05682 793 aaKnown RBP23.62■■□□□ 1.37
CLN3-243ENST00000635973 TBC1D9BQ66K14 1250 aa23.62■■□□□ 1.37
CLN3-243ENST00000635973 C9orf131Q5VYM1 1079 aa23.61■■□□□ 1.37
CLN3-243ENST00000635973 C2CD5Q86YS7 1000 aa23.61■■□□□ 1.37
CLN3-243ENST00000635973 SALL2Q9Y467 1007 aaPredicted RBP23.61■■□□□ 1.37
CLN3-243ENST00000635973 USP16Q9Y5T5 823 aa23.61■■□□□ 1.37
CLN3-243ENST00000635973 DLEC1Q9Y238 1755 aa23.6■■□□□ 1.37
CLN3-243ENST00000635973 HSPA6P17066 643 aa23.6■■□□□ 1.37
CLN3-243ENST00000635973 DZIP3Q86Y13 1208 aaKnown RBP23.6■■□□□ 1.37
CLN3-243ENST00000635973 SETDB2Q96T68 719 aa23.6■■□□□ 1.37
CLN3-243ENST00000635973 KIF3CO14782 793 aa23.59■■□□□ 1.37
CLN3-243ENST00000635973 CARMIL3Q8ND23 1372 aa23.59■■□□□ 1.37
CLN3-243ENST00000635973 KDM3BQ7LBC6 1761 aa23.58■■□□□ 1.37
CLN3-243ENST00000635973 TTLL6Q8N841 843 aa23.58■■□□□ 1.37
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms