RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 FAM89AQ96GI7 184 aa13.08□□□□□ -0.32
VPS11-208ENST00000621676 ZNF594Q96JF6 807 aaPredicted RBP13.08□□□□□ -0.32
VPS11-208ENST00000621676 FMNL2Q96PY5 1086 aa13.08□□□□□ -0.32
VPS11-208ENST00000621676 PHF14O94880 888 aa13.08□□□□□ -0.32
VPS11-208ENST00000621676 NOP58Q9Y2X3 529 aaKnown RBP13.07□□□□□ -0.32
VPS11-208ENST00000621676 STRCP1A6NGW2 1772 aa13.07□□□□□ -0.32
VPS11-208ENST00000621676 SNRPA1P09661 255 aaKnown RBP13.07□□□□□ -0.32
VPS11-208ENST00000621676 ABCC4O15439 1325 aa13.07□□□□□ -0.32
VPS11-208ENST00000621676 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 NPHP1O15259 732 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 EDC3Q96F86 508 aaKnown RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 IPO9Q96P70 1041 aaKnown RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 MON2Q7Z3U7 1717 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 NBPF26B4DH59 902 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 CHGBP05060 677 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 NEXNQ0ZGT2 675 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 EPHA10Q5JZY3 1008 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 NBPF14Q5TI25 921 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 FOXD4L5Q5VV16 416 aaPredicted RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 NBPF10Q6P3W6 841 aaKnown RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 NBPF15Q8N660 670 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 FOXD4L4Q8WXT5 416 aaPredicted RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 NEUROD6Q96NK8 337 aa13.06□□□□□ -0.32
VPS11-208ENST00000621676 UPF2Q9HAU5 1272 aaKnown RBP13.06□□□□□ -0.32
VPS11-208ENST00000621676 SNAP23O00161 211 aa13.05□□□□□ -0.32
VPS11-208ENST00000621676 BICC1Q9H694 974 aaKnown RBP13.05□□□□□ -0.32
VPS11-208ENST00000621676 CCT4P50991 539 aaKnown RBP13.05□□□□□ -0.32
VPS11-208ENST00000621676 INTS3Q68E01 1043 aaKnown RBP13.05□□□□□ -0.32
VPS11-208ENST00000621676 SUCLG2Q96I99 432 aa13.05□□□□□ -0.32
VPS11-208ENST00000621676 RGPD2P0DJD1 1756 aa13.04□□□□□ -0.32
VPS11-208ENST00000621676 SOS1Q07889 1333 aaPredicted RBP13.04□□□□□ -0.32
VPS11-208ENST00000621676 FOXD4L6Q3SYB3 417 aaPredicted RBP13.04□□□□□ -0.32
VPS11-208ENST00000621676 FOXD4L3Q6VB84 417 aaPredicted RBP13.04□□□□□ -0.32
VPS11-208ENST00000621676 FMN2Q9NZ56 1722 aa13.04□□□□□ -0.32
VPS11-208ENST00000621676 ATP6V1AP38606 617 aa13.04□□□□□ -0.32
VPS11-208ENST00000621676 NUCB1Q02818 461 aa13.04□□□□□ -0.32
VPS11-208ENST00000621676 SLFNL1Q499Z3 407 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 CARD10Q9BWT7 1032 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 HTATSF1O43719 755 aaKnown RBP13.03□□□□□ -0.32
VPS11-208ENST00000621676 IGKV5-2P06315 115 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 BEND3Q5T5X7 828 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 UNC5CLQ8IV45 518 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 SMC5Q8IY18 1101 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 ANKRD44Q8N8A2 993 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 HELBQ8NG08 1087 aaPredicted RBP13.03□□□□□ -0.32
VPS11-208ENST00000621676 ARHGAP45Q92619 1136 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 USP21Q9UK80 565 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 ZBTB1Q9Y2K1 713 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 CAMTA1Q9Y6Y1 1673 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 KNDC1Q76NI1 1749 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 RTL1A6NKG5 1358 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 HSP90AA1P07900 732 aaKnown RBP13.03□□□□□ -0.32
VPS11-208ENST00000621676 KSR2Q6VAB6 950 aa13.03□□□□□ -0.32
VPS11-208ENST00000621676 MED1Q15648 1581 aaPredicted RBP13.03□□□□□ -0.32
VPS11-208ENST00000621676 AKAP12Q02952 1782 aa13.02□□□□□ -0.32
VPS11-208ENST00000621676 HMMRO75330 724 aa13.02□□□□□ -0.32
VPS11-208ENST00000621676 PDIA6Q15084 440 aa13.02□□□□□ -0.32
VPS11-208ENST00000621676 GNAI3P08754 354 aa13.02□□□□□ -0.33
VPS11-208ENST00000621676 HLFQ16534 295 aa13.02□□□□□ -0.33
VPS11-208ENST00000621676 BOLA2Q9H3K6 86 aa13.02□□□□□ -0.33
VPS11-208ENST00000621676 DDX21Q9NR30 783 aaKnown RBP eCLIP13.02□□□□□ -0.33
VPS11-208ENST00000621676 PTPRCP08575 1304 aa13.02□□□□□ -0.33
VPS11-208ENST00000621676 ADGRB2O60241 1585 aa13.02□□□□□ -0.33
VPS11-208ENST00000621676 DDX58O95786 925 aaKnown RBP13.01□□□□□ -0.33
VPS11-208ENST00000621676 GSPT1P15170 499 aaKnown RBP13.01□□□□□ -0.33
VPS11-208ENST00000621676 HDAC1Q13547 482 aaPredicted RBP13.01□□□□□ -0.33
VPS11-208ENST00000621676 LMBR1LQ6UX01 489 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 PCDH11XQ9BZA7 1347 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 PCDH11YQ9BZA8 1340 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 DLG5Q8TDM6 1919 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 PLEKHM2Q8IWE5 1019 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 MARCH10Q8NA82 808 aaPredicted RBP13.01□□□□□ -0.33
VPS11-208ENST00000621676 KDM6AO15550 1401 aaPredicted RBP13.01□□□□□ -0.33
VPS11-208ENST00000621676 SNRKQ9NRH2 765 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 ATG3Q9NT62 314 aa13.01□□□□□ -0.33
VPS11-208ENST00000621676 HCLS1P14317 486 aaPredicted RBP13□□□□□ -0.33
VPS11-208ENST00000621676 LRRCC1Q9C099 1032 aa13□□□□□ -0.33
VPS11-208ENST00000621676 PPFIA3O75145 1194 aa13□□□□□ -0.33
VPS11-208ENST00000621676 TBC1D9Q6ZT07 1266 aa13□□□□□ -0.33
VPS11-208ENST00000621676 AACSQ86V21 672 aa13□□□□□ -0.33
VPS11-208ENST00000621676 SLC4A9Q96Q91 983 aa13□□□□□ -0.33
VPS11-208ENST00000621676 TLR7Q9NYK1 1049 aaKnown RBP13□□□□□ -0.33
VPS11-208ENST00000621676 GRM8O00222 908 aa13□□□□□ -0.33
VPS11-208ENST00000621676 SDSP20132 328 aa13□□□□□ -0.33
VPS11-208ENST00000621676 GTF2E1P29083 439 aaPredicted RBP13□□□□□ -0.33
VPS11-208ENST00000621676 DNAJC2Q99543 621 aaKnown RBP13□□□□□ -0.33
VPS11-208ENST00000621676 DCTPP1Q9H773 170 aa13□□□□□ -0.33
VPS11-208ENST00000621676 NFAT5O94916 1531 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 TIMM10P62072 90 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 HSP90AB3PQ58FF7 597 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 TAF7LQ5H9L4 462 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 STK11IPQ8N1F8 1099 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 C22orf23Q9BZE7 217 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 ANO2Q9NQ90 1003 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 IQSEC3Q9UPP2 1182 aaPredicted RBP12.99□□□□□ -0.33
VPS11-208ENST00000621676 RGPD5Q99666 1765 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 HYPKQ9NX55 129 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 ADCY9O60503 1353 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 CEMIPQ8WUJ3 1361 aa12.99□□□□□ -0.33
VPS11-208ENST00000621676 CWC27Q6UX04 472 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms