RNA–Protein interactions for RNA: ENST00000614932.1

VPS39-214, Transcript of VPS39, HOPS complex subunit, humanhuman

Gene VPS39, Length 2,835 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-214ENST00000614932 KIAA1524Q8TCG1 905 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 ZKSCAN7Q9P0L1 754 aaPredicted RBP12.24□□□□□ -0.45
VPS39-214ENST00000614932 SETD1AO15047 1707 aaKnown RBP12.24□□□□□ -0.45
VPS39-214ENST00000614932 ZNF397Q8NF99 534 aaPredicted RBP12.24□□□□□ -0.45
VPS39-214ENST00000614932 RAI14Q9P0K7 980 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 JRKLQ9Y4A0 524 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 PRPF40AO75400 957 aaKnown RBP12.24□□□□□ -0.45
VPS39-214ENST00000614932 GOLGA6L1Q8N7Z2 621 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 GAS2L2Q8NHY3 880 aa12.24□□□□□ -0.45
VPS39-214ENST00000614932 PNPLA6Q8IY17 1366 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 ADAMTS13Q76LX8 1427 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 MAP2K1Q02750 393 aaPredicted RBP12.23□□□□□ -0.45
VPS39-214ENST00000614932 UVSSAQ2YD98 709 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 HSP90AB2PQ58FF8 381 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 SYT10Q6XYQ8 523 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 ZNF446Q9NWS9 450 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 CPSF1Q10570 1443 aaKnown RBP12.23□□□□□ -0.45
VPS39-214ENST00000614932 EDC4Q6P2E9 1401 aaKnown RBP12.23□□□□□ -0.45
VPS39-214ENST00000614932 SMTNL1A8MU46 457 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 SULT6B1Q6IMI4 303 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 KIF1BPQ96EK5 621 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 RWDD1Q9H446 243 aaPredicted RBP12.23□□□□□ -0.45
VPS39-214ENST00000614932 LRRC7Q96NW7 1537 aa12.23□□□□□ -0.45
VPS39-214ENST00000614932 ATP7BP35670 1465 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 DLC1Q96QB1 1528 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 TDO2P48775 406 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 MVPQ14764 893 aaKnown RBP12.22□□□□□ -0.45
VPS39-214ENST00000614932 TMEM57Q8N5G2 664 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 NFATC2IPQ8NCF5 419 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 MNS1Q8NEH6 495 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 RNF217Q8TC41 542 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 TRIM66O15016 1216 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 NFE2L2Q16236 605 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 TXLNBQ8N3L3 684 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 NGDNQ8NEJ9 315 aaKnown RBP12.22□□□□□ -0.45
VPS39-214ENST00000614932 CXorf56Q9H5V9 222 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 SH3BP1Q9Y3L3 701 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 AK9Q5TCS8 1911 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 TTC21BQ7Z4L5 1316 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 PTPRUQ92729 1446 aa12.22□□□□□ -0.45
VPS39-214ENST00000614932 MAP2P11137 1827 aaKnown RBP12.22□□□□□ -0.45
VPS39-214ENST00000614932 DRC1Q96MC2 740 aa12.21□□□□□ -0.45
VPS39-214ENST00000614932 KIF20BQ96Q89 1820 aa12.21□□□□□ -0.45
VPS39-214ENST00000614932 CD2BP2O95400 341 aaKnown RBP12.21□□□□□ -0.46
VPS39-214ENST00000614932 KRT24Q2M2I5 525 aa12.21□□□□□ -0.46
VPS39-214ENST00000614932 C1orf115Q9H7X2 142 aa12.21□□□□□ -0.46
VPS39-214ENST00000614932 MED4Q9NPJ6 270 aa12.21□□□□□ -0.46
VPS39-214ENST00000614932 ST7Q9NRC1 585 aa12.21□□□□□ -0.46
VPS39-214ENST00000614932 ADGRB2O60241 1585 aa12.21□□□□□ -0.46
VPS39-214ENST00000614932 CYP2E1P05181 493 aaPredicted RBP12.2□□□□□ -0.46
VPS39-214ENST00000614932 KMT5BQ4FZB7 885 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 ATF7IPQ6VMQ6 1270 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 CCDC91Q7Z6B0 441 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 SUFUQ9UMX1 484 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 MBD3O95983 291 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 EIF4A2Q14240 407 aaKnown RBP12.2□□□□□ -0.46
VPS39-214ENST00000614932 FAM184AQ8NB25 1140 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 DEF6Q9H4E7 631 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 MED14O60244 1454 aa12.2□□□□□ -0.46
VPS39-214ENST00000614932 A0A1B0GUL7 405 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 ADCY5O95622 1261 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 TPM3P06753 285 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 ATP2B1P20020 1258 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 SEMA3FQ13275 785 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 NAA30Q147X3 362 aaPredicted RBP12.19□□□□□ -0.46
VPS39-214ENST00000614932 MCM10Q7L590 875 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 MBIPQ9NS73 344 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 UBR1Q8IWV7 1749 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 CLSTN1O94985 981 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 RBM6P78332 1123 aaKnown RBP12.19□□□□□ -0.46
VPS39-214ENST00000614932 KIF2CQ99661 725 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 ATG3Q9NT62 314 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 MIS18AQ9NYP9 233 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 ZNF853P0CG23 659 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 KCNA6P17658 529 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 KRBA2Q6ZNG9 492 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 CWC15Q9P013 229 aaKnown RBP12.19□□□□□ -0.46
VPS39-214ENST00000614932 USP25Q9UHP3 1055 aa12.19□□□□□ -0.46
VPS39-214ENST00000614932 FAM135BQ49AJ0 1406 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 DNAJC21Q5F1R6 531 aaKnown RBP12.18□□□□□ -0.46
VPS39-214ENST00000614932 TEX35Q5T0J7 233 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 C8orf58Q8NAV2 365 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 LTV1Q96GA3 475 aaPredicted RBP12.18□□□□□ -0.46
VPS39-214ENST00000614932 SGSM3Q96HU1 749 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 TAOK2Q9UL54 1235 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 PYCARDQ9ULZ3 195 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 ANKRD26Q9UPS8 1709 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 FOXO3O43524 673 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 GSCP56915 257 aaPredicted RBP12.18□□□□□ -0.46
VPS39-214ENST00000614932 LCMT1Q9UIC8 334 aa12.18□□□□□ -0.46
VPS39-214ENST00000614932 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.17□□□□□ -0.46
VPS39-214ENST00000614932 TSGA10IPQ3SY00 556 aa12.17□□□□□ -0.46
VPS39-214ENST00000614932 CCDC112Q8NEF3 446 aa12.17□□□□□ -0.46
VPS39-214ENST00000614932 PAXBP1Q9Y5B6 917 aa12.17□□□□□ -0.46
VPS39-214ENST00000614932 PLEKHG1Q9ULL1 1385 aa12.17□□□□□ -0.46
VPS39-214ENST00000614932 SART3Q15020 963 aaKnown RBP12.17□□□□□ -0.46
VPS39-214ENST00000614932 TTC31Q49AM3 519 aaPredicted RBP12.17□□□□□ -0.46
VPS39-214ENST00000614932 CCDC189A1A4V9 331 aa12.16□□□□□ -0.46
VPS39-214ENST00000614932 BMS1Q14692 1282 aaKnown RBP12.16□□□□□ -0.46
VPS39-214ENST00000614932 NOM1Q5C9Z4 860 aaKnown RBP12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms