RNA–Protein interactions for RNA: ENST00000613444.4

USP39-220, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,161 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-220ENST00000613444 ASAP1Q9ULH1 1129 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 DDX19BQ9UMR2 479 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 USP16Q9Y5T5 823 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 PROSER3Q2NL68 480 aa18.14■□□□□ 0.49
USP39-220ENST00000613444 DBF4Q9UBU7 674 aaPredicted RBP18.14■□□□□ 0.49
USP39-220ENST00000613444 PRIM1P49642 420 aaKnown RBP18.13■□□□□ 0.49
USP39-220ENST00000613444 INTS3Q68E01 1043 aaKnown RBP18.13■□□□□ 0.49
USP39-220ENST00000613444 ANXA1P04083 346 aa18.13■□□□□ 0.49
USP39-220ENST00000613444 ZBTB7BO15156 539 aaPredicted RBP18.11■□□□□ 0.49
USP39-220ENST00000613444 QTRT2Q9H974 415 aaKnown RBP18.11■□□□□ 0.49
USP39-220ENST00000613444 DDX21Q9NR30 783 aaKnown RBP eCLIP18.11■□□□□ 0.49
USP39-220ENST00000613444 ZBTB40Q9NUA8 1239 aa18.11■□□□□ 0.49
USP39-220ENST00000613444 F6X3S4 739 aa18.11■□□□□ 0.49
USP39-220ENST00000613444 PTCD1O75127 700 aaKnown RBP18.11■□□□□ 0.49
USP39-220ENST00000613444 LRP10Q7Z4F1 713 aa18.11■□□□□ 0.49
USP39-220ENST00000613444 FKBP5Q13451 457 aaPredicted RBP18.1■□□□□ 0.49
USP39-220ENST00000613444 PCDHB15Q9Y5E8 787 aa18.1■□□□□ 0.49
USP39-220ENST00000613444 KDM2BQ8NHM5 1336 aa18.1■□□□□ 0.49
USP39-220ENST00000613444 SYTL4Q96C24 671 aaPredicted RBP18.09■□□□□ 0.49
USP39-220ENST00000613444 ACSBG1Q96GR2 724 aa18.09■□□□□ 0.49
USP39-220ENST00000613444 HYPKQ9NX55 129 aa18.09■□□□□ 0.49
USP39-220ENST00000613444 PXDNLA1KZ92 1463 aa18.09■□□□□ 0.49
USP39-220ENST00000613444 SBF2Q86WG5 1849 aa18.09■□□□□ 0.49
USP39-220ENST00000613444 FBXO41Q8TF61 875 aa18.08■□□□□ 0.49
USP39-220ENST00000613444 VSIG10Q8N0Z9 540 aa18.08■□□□□ 0.48
USP39-220ENST00000613444 SLC4A9Q96Q91 983 aa18.08■□□□□ 0.48
USP39-220ENST00000613444 BRWD3Q6RI45 1802 aa18.08■□□□□ 0.48
USP39-220ENST00000613444 TJP1Q07157 1748 aa18.08■□□□□ 0.48
USP39-220ENST00000613444 ADCY9O60503 1353 aa18.07■□□□□ 0.48
USP39-220ENST00000613444 A0A0G2JS52 829 aa18.07■□□□□ 0.48
USP39-220ENST00000613444 MYT1Q01538 1121 aa18.07■□□□□ 0.48
USP39-220ENST00000613444 NHSQ6T4R5 1651 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 ERBB4Q15303 1308 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 KCNQ2O43526 872 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 SEPT12Q8IYM1 358 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 CICQ96RK0 1608 aaPredicted RBP18.06■□□□□ 0.48
USP39-220ENST00000613444 NBPF26B4DH59 902 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 CCT4P50991 539 aaKnown RBP18.06■□□□□ 0.48
USP39-220ENST00000613444 NBPF14Q5TI25 921 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 NBPF10Q6P3W6 841 aaKnown RBP18.06■□□□□ 0.48
USP39-220ENST00000613444 NBPF15Q8N660 670 aa18.06■□□□□ 0.48
USP39-220ENST00000613444 PI4KAP2A4QPH2 592 aa18.05■□□□□ 0.48
USP39-220ENST00000613444 IGHDP01880 384 aa18.05■□□□□ 0.48
USP39-220ENST00000613444 SLC4A10Q6U841 1118 aa18.05■□□□□ 0.48
USP39-220ENST00000613444 PI4KAP1Q8N8J0 262 aa18.05■□□□□ 0.48
USP39-220ENST00000613444 MYL6BP14649 208 aa18.04■□□□□ 0.48
USP39-220ENST00000613444 PIP4K2AP48426 406 aaPredicted RBP18.04■□□□□ 0.48
USP39-220ENST00000613444 BTAF1O14981 1849 aa18.04■□□□□ 0.48
USP39-220ENST00000613444 DNAJC10Q8IXB1 793 aa18.04■□□□□ 0.48
USP39-220ENST00000613444 EP400Q96L91 3159 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 RBM42Q9BTD8 480 aaKnown RBP18.03■□□□□ 0.48
USP39-220ENST00000613444 CHMP4BQ9H444 224 aaKnown RBP18.03■□□□□ 0.48
USP39-220ENST00000613444 ZNF831Q5JPB2 1677 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 ATP10DQ9P241 1426 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 A1BGP04217 495 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 FAM182BQ5T319 152 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 KSR2Q6VAB6 950 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 DNAAF4Q8WXU2 420 aa18.03■□□□□ 0.48
USP39-220ENST00000613444 TEX13AQ9BXU3 409 aaPredicted RBP18.03■□□□□ 0.48
USP39-220ENST00000613444 ARFGEF2Q9Y6D5 1785 aa18.02■□□□□ 0.48
USP39-220ENST00000613444 ZNF772Q68DY9 489 aaPredicted RBP18.02■□□□□ 0.48
USP39-220ENST00000613444 CENPQQ7L2Z9 268 aaPredicted RBP18.02■□□□□ 0.48
USP39-220ENST00000613444 PTF1AQ7RTS3 328 aa18.02■□□□□ 0.48
USP39-220ENST00000613444 XAGE3Q8WTP9 111 aa18.02■□□□□ 0.48
USP39-220ENST00000613444 BEND3Q5T5X7 828 aa18.01■□□□□ 0.47
USP39-220ENST00000613444 COPS6Q7L5N1 327 aa18.01■□□□□ 0.47
USP39-220ENST00000613444 MEIS3Q99687 375 aa18.01■□□□□ 0.47
USP39-220ENST00000613444 NUP188Q5SRE5 1749 aa18.01■□□□□ 0.47
USP39-220ENST00000613444 MAP3K2Q9Y2U5 619 aa18.01■□□□□ 0.47
USP39-220ENST00000613444 AIMP1Q12904 312 aaKnown RBP18■□□□□ 0.47
USP39-220ENST00000613444 PALLDQ8WX93 1383 aa18■□□□□ 0.47
USP39-220ENST00000613444 CYP19A1P11511 503 aaPredicted RBP18■□□□□ 0.47
USP39-220ENST00000613444 C1orf115Q9H7X2 142 aa18■□□□□ 0.47
USP39-220ENST00000613444 COL5A3P25940 1745 aaPredicted RBP17.99■□□□□ 0.47
USP39-220ENST00000613444 RREB1Q92766 1687 aa17.99■□□□□ 0.47
USP39-220ENST00000613444 MYH14Q7Z406 1995 aaKnown RBP17.99■□□□□ 0.47
USP39-220ENST00000613444 HDAC1Q13547 482 aaPredicted RBP17.99■□□□□ 0.47
USP39-220ENST00000613444 DDX58O95786 925 aaKnown RBP17.98■□□□□ 0.47
USP39-220ENST00000613444 RBM6P78332 1123 aaKnown RBP17.98■□□□□ 0.47
USP39-220ENST00000613444 LOC102724428A0A0B4J2F2 783 aa17.98■□□□□ 0.47
USP39-220ENST00000613444 STARD3NLO95772 234 aa17.98■□□□□ 0.47
USP39-220ENST00000613444 SIK1P57059 783 aa17.98■□□□□ 0.47
USP39-220ENST00000613444 SRCIN1Q9C0H9 1055 aa17.98■□□□□ 0.47
USP39-220ENST00000613444 USP44Q9H0E7 712 aa17.98■□□□□ 0.47
USP39-220ENST00000613444 SIRT2Q8IXJ6 389 aa17.97■□□□□ 0.47
USP39-220ENST00000613444 SMARCC1Q92922 1105 aaPredicted RBP17.97■□□□□ 0.47
USP39-220ENST00000613444 LY75O60449 1722 aa17.97■□□□□ 0.47
USP39-220ENST00000613444 ANKRD13DQ6ZTN6 518 aa17.97■□□□□ 0.47
USP39-220ENST00000613444 RWDD1Q9H446 243 aaPredicted RBP17.97■□□□□ 0.47
USP39-220ENST00000613444 RGS17Q9UGC6 210 aaPredicted RBP17.97■□□□□ 0.47
USP39-220ENST00000613444 ITPK1Q13572 414 aa17.96■□□□□ 0.46
USP39-220ENST00000613444 TTLL7Q6ZT98 887 aa17.96■□□□□ 0.46
USP39-220ENST00000613444 AFDNP55196 1824 aaKnown RBP17.95■□□□□ 0.46
USP39-220ENST00000613444 IBTKQ9P2D0 1353 aaPredicted RBP17.95■□□□□ 0.46
USP39-220ENST00000613444 RIC3Q7Z5B4 369 aa17.95■□□□□ 0.46
USP39-220ENST00000613444 ALDH1L1O75891 902 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 IGKV5-2P06315 115 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 ATP6V1AP38606 617 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 KRT27Q7Z3Y8 459 aa17.94■□□□□ 0.46
USP39-220ENST00000613444 LINS1Q8NG48 757 aa17.94■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms