RNA–Protein interactions for RNA: ENST00000601816.3

PNKP-216, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 682 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-216ENST00000601816 FMNL2Q96PY5 1086 aa34.63■■■■□ 3.13
PNKP-216ENST00000601816 HTATSF1O43719 755 aaKnown RBP34.62■■■■□ 3.13
PNKP-216ENST00000601816 ZNF784Q8NCA9 323 aaPredicted RBP34.62■■■■□ 3.13
PNKP-216ENST00000601816 TEX13AQ9BXU3 409 aaPredicted RBP34.62■■■■□ 3.13
PNKP-216ENST00000601816 KIF13BQ9NQT8 1826 aa34.61■■■■□ 3.13
PNKP-216ENST00000601816 CANXP27824 592 aaKnown RBP34.61■■■■□ 3.13
PNKP-216ENST00000601816 USPL1Q5W0Q7 1092 aa34.6■■■■□ 3.13
PNKP-216ENST00000601816 WWC3Q9ULE0 1092 aa34.6■■■■□ 3.13
PNKP-216ENST00000601816 PXDNLA1KZ92 1463 aa34.59■■■■□ 3.13
PNKP-216ENST00000601816 KCNQ3O43525 872 aa34.58■■■■□ 3.13
PNKP-216ENST00000601816 TGFB2P61812 414 aa34.58■■■■□ 3.13
PNKP-216ENST00000601816 DCTN1Q14203 1278 aa34.58■■■■□ 3.13
PNKP-216ENST00000601816 NARFQ9UHQ1 456 aa34.58■■■■□ 3.13
PNKP-216ENST00000601816 DDR1Q08345 913 aa34.57■■■■□ 3.12
PNKP-216ENST00000601816 PNNQ9H307 717 aaKnown RBP34.56■■■■□ 3.12
PNKP-216ENST00000601816 PLEKHF1Q96S99 279 aa34.55■■■■□ 3.12
PNKP-216ENST00000601816 KIAA1551Q9HCM1 1747 aa34.54■■■■□ 3.12
PNKP-216ENST00000601816 TM4SF1P30408 202 aa34.53■■■■□ 3.12
PNKP-216ENST00000601816 EIF5P55010 431 aaKnown RBP34.53■■■■□ 3.12
PNKP-216ENST00000601816 MAPK8IP3Q9UPT6 1336 aa34.53■■■■□ 3.12
PNKP-216ENST00000601816 A0A087WZG4 1122 aa34.52■■■■□ 3.12
PNKP-216ENST00000601816 A0A0G2JLW4 131 aa34.52■■■■□ 3.12
PNKP-216ENST00000601816 POLRMTO00411 1230 aaKnown RBP34.51■■■■□ 3.12
PNKP-216ENST00000601816 MYBBP1AQ9BQG0 1328 aaKnown RBP34.51■■■■□ 3.11
PNKP-216ENST00000601816 N4BP2Q86UW6 1770 aaPredicted RBP34.5■■■■□ 3.11
PNKP-216ENST00000601816 NFE2L2Q16236 605 aa34.5■■■■□ 3.11
PNKP-216ENST00000601816 DPEP1P16444 411 aa34.49■■■■□ 3.11
PNKP-216ENST00000601816 TAF7Q15545 349 aaPredicted RBP34.49■■■■□ 3.11
PNKP-216ENST00000601816 BCL2L12Q9HB09 334 aa34.49■■■■□ 3.11
PNKP-216ENST00000601816 ZNF330Q9Y3S2 320 aaPredicted RBP34.49■■■■□ 3.11
PNKP-216ENST00000601816 A1BGP04217 495 aa34.48■■■■□ 3.11
PNKP-216ENST00000601816 IL6STP40189 918 aaPredicted RBP34.48■■■■□ 3.11
PNKP-216ENST00000601816 NFIXQ14938 502 aa34.48■■■■□ 3.11
PNKP-216ENST00000601816 DLG5Q8TDM6 1919 aa34.47■■■■□ 3.11
PNKP-216ENST00000601816 SNRPA1P09661 255 aaKnown RBP34.46■■■■□ 3.11
PNKP-216ENST00000601816 NPM2Q86SE8 214 aaKnown RBP34.45■■■■□ 3.11
PNKP-216ENST00000601816 BCS1LQ9Y276 419 aa34.45■■■■□ 3.11
PNKP-216ENST00000601816 USP16Q9Y5T5 823 aa34.45■■■■□ 3.11
PNKP-216ENST00000601816 PRAMEF22A3QJZ6 481 aa34.42■■■■□ 3.1
PNKP-216ENST00000601816 PNISRQ8TF01 805 aaKnown RBP34.42■■■■□ 3.1
PNKP-216ENST00000601816 TBC1D2BQ9UPU7 963 aa34.42■■■■□ 3.1
PNKP-216ENST00000601816 SCN7AQ01118 1682 aa34.41■■■■□ 3.1
PNKP-216ENST00000601816 MIS18AQ9NYP9 233 aa34.41■■■■□ 3.1
PNKP-216ENST00000601816 SERPINB2P05120 415 aa34.4■■■■□ 3.1
PNKP-216ENST00000601816 KCNA3P22001 575 aa34.39■■■■□ 3.1
PNKP-216ENST00000601816 BICDL1Q6ZP65 573 aa34.39■■■■□ 3.1
PNKP-216ENST00000601816 THUMPD2Q9BTF0 503 aaKnown RBP34.39■■■■□ 3.1
PNKP-216ENST00000601816 ZEB1P37275 1124 aaPredicted RBP34.38■■■■□ 3.09
PNKP-216ENST00000601816 PIM2Q9P1W9 311 aa34.38■■■■□ 3.09
PNKP-216ENST00000601816 NRXN2Q9P2S2 1712 aa34.38■■■■□ 3.09
PNKP-216ENST00000601816 BRCA1P38398 1863 aaKnown RBP34.37■■■■□ 3.09
PNKP-216ENST00000601816 AFDNP55196 1824 aaKnown RBP34.37■■■■□ 3.09
PNKP-216ENST00000601816 CHRNA5P30532 468 aa34.36■■■■□ 3.09
PNKP-216ENST00000601816 PIP4K2AP48426 406 aaPredicted RBP34.36■■■■□ 3.09
PNKP-216ENST00000601816 TBC1D9BQ66K14 1250 aa34.36■■■■□ 3.09
PNKP-216ENST00000601816 DZIP3Q86Y13 1208 aaKnown RBP34.35■■■■□ 3.09
PNKP-216ENST00000601816 ATP10DQ9P241 1426 aa34.35■■■■□ 3.09
PNKP-216ENST00000601816 KDM3BQ7LBC6 1761 aa34.34■■■■□ 3.09
PNKP-216ENST00000601816 CAMTA2O94983 1202 aa34.34■■■■□ 3.09
PNKP-216ENST00000601816 ADCY9O60503 1353 aa34.34■■■■□ 3.09
PNKP-216ENST00000601816 RIPK4P57078 832 aa34.33■■■■□ 3.09
PNKP-216ENST00000601816 WDR43Q15061 677 aaKnown RBP eCLIP34.33■■■■□ 3.09
PNKP-216ENST00000601816 DALRD3Q5D0E6 543 aaKnown RBP34.33■■■■□ 3.09
PNKP-216ENST00000601816 PRKRIP1Q9H875 184 aaPredicted RBP34.33■■■■□ 3.09
PNKP-216ENST00000601816 ARHGAP27Q6ZUM4 889 aa34.32■■■■□ 3.08
PNKP-216ENST00000601816 TMPOP42166 694 aaKnown RBP34.3■■■■□ 3.08
PNKP-216ENST00000601816 CARMIL3Q8ND23 1372 aa34.3■■■■□ 3.08
PNKP-216ENST00000601816 LAMB4A4D0S4 1761 aa34.3■■■■□ 3.08
PNKP-216ENST00000601816 BCORQ6W2J9 1755 aa34.29■■■■□ 3.08
PNKP-216ENST00000601816 NBPF26B4DH59 902 aa34.29■■■■□ 3.08
PNKP-216ENST00000601816 EIF4A1P60842 406 aaKnown RBP34.29■■■■□ 3.08
PNKP-216ENST00000601816 LMOD3Q0VAK6 560 aa34.29■■■■□ 3.08
PNKP-216ENST00000601816 NBPF10Q6P3W6 841 aaKnown RBP34.29■■■■□ 3.08
PNKP-216ENST00000601816 NBPF15Q8N660 670 aa34.29■■■■□ 3.08
PNKP-216ENST00000601816 CCDC146Q8IYE0 955 aa34.28■■■■□ 3.08
PNKP-216ENST00000601816 ARFGEF1Q9Y6D6 1849 aa34.27■■■■□ 3.08
PNKP-216ENST00000601816 GIGYF1O75420 1035 aaPredicted RBP34.27■■■■□ 3.08
PNKP-216ENST00000601816 SETDB2Q96T68 719 aa34.27■■■■□ 3.08
PNKP-216ENST00000601816 TSPYL4Q9UJ04 414 aa34.25■■■■□ 3.07
PNKP-216ENST00000601816 ZNF652Q9Y2D9 606 aa34.25■■■■□ 3.07
PNKP-216ENST00000601816 CLEC4GQ6UXB4 293 aa34.24■■■■□ 3.07
PNKP-216ENST00000601816 C2CD5Q86YS7 1000 aa34.24■■■■□ 3.07
PNKP-216ENST00000601816 RUNDC1Q96C34 613 aa34.24■■■■□ 3.07
PNKP-216ENST00000601816 RRP7AQ9Y3A4 280 aaKnown RBP34.24■■■■□ 3.07
PNKP-216ENST00000601816 PRR5LQ6MZQ0 368 aa34.23■■■■□ 3.07
PNKP-216ENST00000601816 H0YIN7 160 aa34.22■■■■□ 3.07
PNKP-216ENST00000601816 GPBP1L1Q9HC44 474 aaPredicted RBP34.22■■■■□ 3.07
PNKP-216ENST00000601816 ADAMTS8Q9UP79 889 aa34.22■■■■□ 3.07
PNKP-216ENST00000601816 NPHP1O15259 732 aa34.21■■■■□ 3.07
PNKP-216ENST00000601816 CNBD1Q8NA66 436 aa34.21■■■■□ 3.07
PNKP-216ENST00000601816 ZNF526Q8TF50 670 aaPredicted RBP34.21■■■■□ 3.07
PNKP-216ENST00000601816 BRIP1Q9BX63 1249 aa34.21■■■■□ 3.07
PNKP-216ENST00000601816 DLEC1Q9Y238 1755 aa34.21■■■■□ 3.07
PNKP-216ENST00000601816 RGL2O15211 777 aa34.2■■■■□ 3.07
PNKP-216ENST00000601816 C1QTNF8P60827 252 aa34.2■■■■□ 3.07
PNKP-216ENST00000601816 NEUROD2Q15784 382 aa34.2■■■■□ 3.07
PNKP-216ENST00000601816 PDE6BP35913 854 aa34.19■■■■□ 3.06
PNKP-216ENST00000601816 CCDC24Q8N4L8 307 aa34.19■■■■□ 3.06
PNKP-216ENST00000601816 BABAM1Q9NWV8 329 aa34.19■■■■□ 3.06
PNKP-216ENST00000601816 PDZRN3Q9UPQ7 1066 aa34.19■■■■□ 3.06
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms