RNA–Protein interactions for RNA: ENST00000600879.5

HIF3A-219, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 4

Gene HIF3A, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-219ENST00000600879 CARMIL3Q8ND23 1372 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 MTHFSP49914 203 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 NFIXQ14938 502 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 AEBP1Q8IUX7 1158 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 DNAJC10Q8IXB1 793 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 CCDC24Q8N4L8 307 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 TJP1Q07157 1748 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 TIAM2Q8IVF5 1701 aa13.73□□□□□ -0.21
HIF3A-219ENST00000600879 ZPR1O75312 459 aa13.72□□□□□ -0.21
HIF3A-219ENST00000600879 C2CD5Q86YS7 1000 aa13.72□□□□□ -0.21
HIF3A-219ENST00000600879 C1orf141Q5JVX7 400 aa13.71□□□□□ -0.21
HIF3A-219ENST00000600879 BICDL1Q6ZP65 573 aa13.71□□□□□ -0.21
HIF3A-219ENST00000600879 ADAMTS7Q9UKP4 1686 aa13.7□□□□□ -0.22
HIF3A-219ENST00000600879 SLC34A2O95436 690 aa13.7□□□□□ -0.22
HIF3A-219ENST00000600879 TTLL6Q8N841 843 aa13.7□□□□□ -0.22
HIF3A-219ENST00000600879 SOS1Q07889 1333 aaPredicted RBP13.69□□□□□ -0.22
HIF3A-219ENST00000600879 ZC3H4Q9UPT8 1303 aaKnown RBP13.69□□□□□ -0.22
HIF3A-219ENST00000600879 C21orf2O43822 256 aa13.69□□□□□ -0.22
HIF3A-219ENST00000600879 SERPINB2P05120 415 aa13.69□□□□□ -0.22
HIF3A-219ENST00000600879 AMOTQ4VCS5 1084 aa13.69□□□□□ -0.22
HIF3A-219ENST00000600879 BCL2L12Q9HB09 334 aa13.69□□□□□ -0.22
HIF3A-219ENST00000600879 CREBZFQ9NS37 354 aa13.69□□□□□ -0.22
HIF3A-219ENST00000600879 DDNO94850 711 aaPredicted RBP13.68□□□□□ -0.22
HIF3A-219ENST00000600879 SLC39A6Q13433 755 aa13.68□□□□□ -0.22
HIF3A-219ENST00000600879 FAM161AQ3B820 660 aa13.68□□□□□ -0.22
HIF3A-219ENST00000600879 ERFEQ4G0M1 354 aa13.68□□□□□ -0.22
HIF3A-219ENST00000600879 CHADLQ6NUI6 762 aa13.68□□□□□ -0.22
HIF3A-219ENST00000600879 ZNF622Q969S3 477 aaKnown RBP eCLIP13.68□□□□□ -0.22
HIF3A-219ENST00000600879 LBX1P52954 281 aa13.67□□□□□ -0.22
HIF3A-219ENST00000600879 ZBTB1Q9Y2K1 713 aa13.67□□□□□ -0.22
HIF3A-219ENST00000600879 AFDNP55196 1824 aaKnown RBP13.67□□□□□ -0.22
HIF3A-219ENST00000600879 H0YIN7 160 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 CYP19A1P11511 503 aaPredicted RBP13.66□□□□□ -0.22
HIF3A-219ENST00000600879 VEGFBP49765 207 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 SULT6B1Q6IMI4 303 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 DPY19L2Q6NUT2 758 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 NARFQ9UHQ1 456 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 COL15A1P39059 1388 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 CNTNAP1P78357 1384 aa13.66□□□□□ -0.22
HIF3A-219ENST00000600879 CANXP27824 592 aaKnown RBP13.65□□□□□ -0.22
HIF3A-219ENST00000600879 LGR6Q9HBX8 967 aa13.65□□□□□ -0.22
HIF3A-219ENST00000600879 CCDC88AQ3V6T2 1871 aa13.65□□□□□ -0.22
HIF3A-219ENST00000600879 CTCFP49711 727 aaPredicted RBP13.64□□□□□ -0.23
HIF3A-219ENST00000600879 AIDAQ96BJ3 306 aa13.64□□□□□ -0.23
HIF3A-219ENST00000600879 DLEC1Q9Y238 1755 aa13.63□□□□□ -0.23
HIF3A-219ENST00000600879 TBC1D9BQ66K14 1250 aa13.63□□□□□ -0.23
HIF3A-219ENST00000600879 SLC52A2Q9HAB3 445 aa13.63□□□□□ -0.23
HIF3A-219ENST00000600879 PRDM10Q9NQV6 1147 aa13.63□□□□□ -0.23
HIF3A-219ENST00000600879 NRXN2Q9P2S2 1712 aa13.62□□□□□ -0.23
HIF3A-219ENST00000600879 EAPPQ56P03 285 aaPredicted RBP13.62□□□□□ -0.23
HIF3A-219ENST00000600879 ABHD8Q96I13 439 aa13.62□□□□□ -0.23
HIF3A-219ENST00000600879 PANK3Q9H999 370 aa13.62□□□□□ -0.23
HIF3A-219ENST00000600879 ZNF330Q9Y3S2 320 aaPredicted RBP13.62□□□□□ -0.23
HIF3A-219ENST00000600879 PASKQ96RG2 1323 aa13.62□□□□□ -0.23
HIF3A-219ENST00000600879 SCN11AQ9UI33 1791 aa13.61□□□□□ -0.23
HIF3A-219ENST00000600879 AKAP4Q5JQC9 854 aa13.61□□□□□ -0.23
HIF3A-219ENST00000600879 MORC1Q86VD1 984 aa13.61□□□□□ -0.23
HIF3A-219ENST00000600879 COL11A2P13942 1736 aaPredicted RBP13.61□□□□□ -0.23
HIF3A-219ENST00000600879 RNMTO43148 476 aaKnown RBP13.6□□□□□ -0.23
HIF3A-219ENST00000600879 HSPA8P11142 646 aaKnown RBP13.6□□□□□ -0.23
HIF3A-219ENST00000600879 TAOK3Q9H2K8 898 aa13.6□□□□□ -0.23
HIF3A-219ENST00000600879 WBP1LQ9NX94 342 aa13.6□□□□□ -0.23
HIF3A-219ENST00000600879 TMEM88BA6NKF7 163 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 HMOX1P09601 288 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 IL13P35225 146 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 PRR5LQ6MZQ0 368 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 OLFM4Q6UX06 510 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 TAF1DQ9H5J8 278 aaPredicted RBP13.59□□□□□ -0.23
HIF3A-219ENST00000600879 TBC1D2BQ9UPU7 963 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 CLEC11AQ9Y240 323 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 ZNF541Q9H0D2 1346 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 ANKRD31Q8N7Z5 1873 aa13.59□□□□□ -0.23
HIF3A-219ENST00000600879 CCDC85CA6NKD9 419 aa13.58□□□□□ -0.24
HIF3A-219ENST00000600879 ITGBL1O95965 494 aaPredicted RBP13.58□□□□□ -0.24
HIF3A-219ENST00000600879 LDHDQ86WU2 507 aa13.58□□□□□ -0.24
HIF3A-219ENST00000600879 FMR1Q06787 632 aaKnown RBP eCLIP13.57□□□□□ -0.24
HIF3A-219ENST00000600879 GRM1Q13255 1194 aa13.57□□□□□ -0.24
HIF3A-219ENST00000600879 MAP1SQ66K74 1059 aaPredicted RBP13.57□□□□□ -0.24
HIF3A-219ENST00000600879 PRPF40BQ6NWY9 871 aaKnown RBP13.57□□□□□ -0.24
HIF3A-219ENST00000600879 BRIP1Q9BX63 1249 aa13.57□□□□□ -0.24
HIF3A-219ENST00000600879 TSKSQ9UJT2 592 aa13.57□□□□□ -0.24
HIF3A-219ENST00000600879 MRC1P22897 1456 aa13.56□□□□□ -0.24
HIF3A-219ENST00000600879 PDE6BP35913 854 aa13.56□□□□□ -0.24
HIF3A-219ENST00000600879 CCER1Q8TC90 406 aaPredicted RBP13.56□□□□□ -0.24
HIF3A-219ENST00000600879 FER1L6Q2WGJ9 1857 aa13.55□□□□□ -0.24
HIF3A-219ENST00000600879 NPHP1O15259 732 aa13.55□□□□□ -0.24
HIF3A-219ENST00000600879 EIF5P55010 431 aaKnown RBP13.55□□□□□ -0.24
HIF3A-219ENST00000600879 MTHFSDQ2M296 383 aaKnown RBP13.55□□□□□ -0.24
HIF3A-219ENST00000600879 ZNF277Q9NRM2 450 aaPredicted RBP13.55□□□□□ -0.24
HIF3A-219ENST00000600879 ABT1Q9ULW3 272 aaKnown RBP13.55□□□□□ -0.24
HIF3A-219ENST00000600879 SLX4Q8IY92 1834 aa13.55□□□□□ -0.24
HIF3A-219ENST00000600879 IQCA1LA6NCM1 817 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 PIP4K2AP48426 406 aaPredicted RBP13.54□□□□□ -0.24
HIF3A-219ENST00000600879 DEFB115Q30KQ5 88 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 TTC5Q8N0Z6 440 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 CFAP44Q96MT7 982 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 RNF123Q5XPI4 1314 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 WDR33Q9C0J8 1336 aaKnown RBP13.54□□□□□ -0.24
HIF3A-219ENST00000600879 LTBP3Q9NS15 1303 aa13.54□□□□□ -0.24
HIF3A-219ENST00000600879 CACNA1SQ13698 1873 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms