RNA–Protein interactions for RNA: ENST00000600733.5

SHKBP1-225, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5 BASIC

Gene SHKBP1, Length 2,284 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-225ENST00000600733 IP6K1Q92551 441 aa24.62■■□□□ 1.53
SHKBP1-225ENST00000600733 POLA2Q14181 598 aa24.61■■□□□ 1.53
SHKBP1-225ENST00000600733 AOX1Q06278 1338 aa24.61■■□□□ 1.53
SHKBP1-225ENST00000600733 SRGAP3O43295 1099 aa24.61■■□□□ 1.53
SHKBP1-225ENST00000600733 CCDC173Q0VFZ6 552 aa24.61■■□□□ 1.53
SHKBP1-225ENST00000600733 CUL4AQ13619 759 aa24.61■■□□□ 1.53
SHKBP1-225ENST00000600733 ANXA1P04083 346 aa24.6■■□□□ 1.53
SHKBP1-225ENST00000600733 RHPN1Q8TCX5 695 aa24.6■■□□□ 1.53
SHKBP1-225ENST00000600733 PPP1R9BQ96SB3 815 aa24.6■■□□□ 1.53
SHKBP1-225ENST00000600733 PI4KAP2A4QPH2 592 aa24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 RAB11FIP3O75154 756 aa24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 PI4KAP1Q8N8J0 262 aa24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 PI4K2BQ8TCG2 481 aa24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 NAP1L5Q96NT1 182 aaPredicted RBP24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 NSFL1CQ9UNZ2 370 aaKnown RBP24.59■■□□□ 1.53
SHKBP1-225ENST00000600733 NFAT5O94916 1531 aa24.58■■□□□ 1.53
SHKBP1-225ENST00000600733 MED1Q15648 1581 aaPredicted RBP24.58■■□□□ 1.53
SHKBP1-225ENST00000600733 BRD1O95696 1058 aa24.58■■□□□ 1.52
SHKBP1-225ENST00000600733 PRIM1P49642 420 aaKnown RBP24.58■■□□□ 1.52
SHKBP1-225ENST00000600733 BEND3Q5T5X7 828 aa24.58■■□□□ 1.52
SHKBP1-225ENST00000600733 DNAAF4Q8WXU2 420 aa24.58■■□□□ 1.52
SHKBP1-225ENST00000600733 LRRC59Q96AG4 307 aaKnown RBP24.58■■□□□ 1.52
SHKBP1-225ENST00000600733 RGPD2P0DJD1 1756 aa24.57■■□□□ 1.52
SHKBP1-225ENST00000600733 ANP32BQ92688 251 aaKnown RBP24.57■■□□□ 1.52
SHKBP1-225ENST00000600733 RBSNQ9H1K0 784 aa24.57■■□□□ 1.52
SHKBP1-225ENST00000600733 TMEM63CQ9P1W3 806 aa24.56■■□□□ 1.52
SHKBP1-225ENST00000600733 KDM3BQ7LBC6 1761 aa24.56■■□□□ 1.52
SHKBP1-225ENST00000600733 IL17RAQ96F46 866 aa24.56■■□□□ 1.52
SHKBP1-225ENST00000600733 MPRIPQ6WCQ1 1025 aa24.55■■□□□ 1.52
SHKBP1-225ENST00000600733 KIF1BPQ96EK5 621 aa24.55■■□□□ 1.52
SHKBP1-225ENST00000600733 INTS4Q96HW7 963 aaKnown RBP24.55■■□□□ 1.52
SHKBP1-225ENST00000600733 HSPA4P34932 840 aa24.55■■□□□ 1.52
SHKBP1-225ENST00000600733 BTBD11A6QL63 1104 aa24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 PLEKHG5O94827 1062 aa24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 TEFQ10587 303 aa24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 HOXB7P09629 217 aa24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 PSME1Q06323 249 aa24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 ZNF530Q6P9A1 599 aaPredicted RBP24.54■■□□□ 1.52
SHKBP1-225ENST00000600733 ESCO1Q5FWF5 840 aa24.53■■□□□ 1.52
SHKBP1-225ENST00000600733 ADCY9O60503 1353 aa24.53■■□□□ 1.52
SHKBP1-225ENST00000600733 SYCE3A1L190 88 aa24.52■■□□□ 1.52
SHKBP1-225ENST00000600733 SGSM2O43147 1006 aa24.52■■□□□ 1.52
SHKBP1-225ENST00000600733 RAD50Q92878 1312 aa24.51■■□□□ 1.51
SHKBP1-225ENST00000600733 FOXD4L6Q3SYB3 417 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-225ENST00000600733 AKAP4Q5JQC9 854 aa24.51■■□□□ 1.51
SHKBP1-225ENST00000600733 FOXD4L3Q6VB84 417 aaPredicted RBP24.51■■□□□ 1.51
SHKBP1-225ENST00000600733 CHD2O14647 1828 aaKnown RBP24.5■■□□□ 1.51
SHKBP1-225ENST00000600733 LMO7Q8WWI1 1683 aa24.5■■□□□ 1.51
SHKBP1-225ENST00000600733 EPB41L2O43491 1005 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-225ENST00000600733 CNTROBQ8N137 903 aa24.49■■□□□ 1.51
SHKBP1-225ENST00000600733 CWC27Q6UX04 472 aaKnown RBP24.49■■□□□ 1.51
SHKBP1-225ENST00000600733 KCNH5Q8NCM2 988 aa24.49■■□□□ 1.51
SHKBP1-225ENST00000600733 OS9Q13438 667 aaPredicted RBP24.48■■□□□ 1.51
SHKBP1-225ENST00000600733 LRSAM1Q6UWE0 723 aa24.48■■□□□ 1.51
SHKBP1-225ENST00000600733 LSG1Q9H089 658 aaKnown RBP24.48■■□□□ 1.51
SHKBP1-225ENST00000600733 SNX14Q9Y5W7 946 aa24.48■■□□□ 1.51
SHKBP1-225ENST00000600733 PXDNQ92626 1479 aa24.48■■□□□ 1.51
SHKBP1-225ENST00000600733 MBD3O95983 291 aa24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 PROSER3Q2NL68 480 aa24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 PLEKHO1Q53GL0 409 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 RASEFQ8IZ41 740 aa24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 XPCQ01831 940 aaPredicted RBP24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 SPG7Q9UQ90 795 aa24.47■■□□□ 1.51
SHKBP1-225ENST00000600733 ZSCAN30Q86W11 494 aa24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 DBF4Q9UBU7 674 aaPredicted RBP24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 MAP3K2Q9Y2U5 619 aa24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 HSP90AB4PQ58FF6 505 aa24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 LARP6Q9BRS8 491 aaKnown RBP24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 GDPD2Q9HCC8 539 aa24.46■■□□□ 1.51
SHKBP1-225ENST00000600733 PRAMEF22A3QJZ6 481 aa24.45■■□□□ 1.5
SHKBP1-225ENST00000600733 RNMTO43148 476 aaKnown RBP24.45■■□□□ 1.5
SHKBP1-225ENST00000600733 CHMP4AQ9BY43 222 aa24.45■■□□□ 1.5
SHKBP1-225ENST00000600733 C9orf78Q9NZ63 289 aaPredicted RBP24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 USP42Q9H9J4 1324 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 CWF19L2Q2TBE0 894 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 C1orf141Q5JVX7 400 aa24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 ANKLE2Q86XL3 938 aa24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 TTC14Q96N46 770 aa24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 PA2G4Q9UQ80 394 aaKnown RBP24.44■■□□□ 1.5
SHKBP1-225ENST00000600733 CRYBG1Q9Y4K1 1723 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 GIGYF1O75420 1035 aaPredicted RBP24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 GCP02774 474 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 MTX1Q13505 466 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 KIAA1211Q6ZU35 1233 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 PDLIM2Q96JY6 352 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 TCHHQ07283 1943 aa24.43■■□□□ 1.5
SHKBP1-225ENST00000600733 TTC41PQ6P2S7 1318 aa24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 GLRX3O76003 335 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 AK2P54819 239 aa24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 AMOTQ4VCS5 1084 aa24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 PHRF1Q9P1Y6 1649 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 RPAP1Q9BWH6 1393 aaPredicted RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 WDR33Q9C0J8 1336 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 GADD45BO75293 160 aaPredicted RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 CLASRPQ8N2M8 674 aaKnown RBP24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 ADGRL3Q9HAR2 1447 aa24.42■■□□□ 1.5
SHKBP1-225ENST00000600733 CPA1P15085 419 aa24.41■■□□□ 1.5
SHKBP1-225ENST00000600733 ORAI2Q96SN7 254 aa24.41■■□□□ 1.5
SHKBP1-225ENST00000600733 LMOD2Q6P5Q4 547 aa24.41■■□□□ 1.5
SHKBP1-225ENST00000600733 RUFY3Q7L099 469 aa24.41■■□□□ 1.5
Retrieved 100 of 20,778 RNA–protein pairs in 7.1 ms