RNA–Protein interactions for RNA: ENST00000600718.5

SHKBP1-224, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 1,993 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-224ENST00000600718 PAPPAQ13219 1627 aa22.27■■□□□ 1.16
SHKBP1-224ENST00000600718 HDAC1Q13547 482 aaPredicted RBP22.27■■□□□ 1.15
SHKBP1-224ENST00000600718 PDIA6Q15084 440 aa22.27■■□□□ 1.15
SHKBP1-224ENST00000600718 FAM98CQ17RN3 349 aaKnown RBP22.27■■□□□ 1.15
SHKBP1-224ENST00000600718 TNKS1BP1Q9C0C2 1729 aaKnown RBP22.26■■□□□ 1.15
SHKBP1-224ENST00000600718 ANXA1P04083 346 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 MARCH10Q8NA82 808 aaPredicted RBP22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 C5P01031 1676 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 UBR2Q8IWV8 1755 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 PXDNLA1KZ92 1463 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 KCPQ6ZWJ8 1503 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 PROSER3Q2NL68 480 aa22.25■■□□□ 1.15
SHKBP1-224ENST00000600718 BCL9O00512 1426 aa22.24■■□□□ 1.15
SHKBP1-224ENST00000600718 ATG3Q9NT62 314 aa22.23■■□□□ 1.15
SHKBP1-224ENST00000600718 ERBB4Q15303 1308 aa22.23■■□□□ 1.15
SHKBP1-224ENST00000600718 PTCD1O75127 700 aaKnown RBP22.23■■□□□ 1.15
SHKBP1-224ENST00000600718 ASAP1Q9ULH1 1129 aa22.23■■□□□ 1.15
SHKBP1-224ENST00000600718 AFF2P51816 1311 aa22.23■■□□□ 1.15
SHKBP1-224ENST00000600718 GLI3P10071 1580 aa22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 PI4KAP2A4QPH2 592 aa22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 DDX58O95786 925 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 PRIM1P49642 420 aaKnown RBP22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 VSIG10Q8N0Z9 540 aa22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 PI4KAP1Q8N8J0 262 aa22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 DNAAF4Q8WXU2 420 aa22.22■■□□□ 1.15
SHKBP1-224ENST00000600718 KSR2Q6VAB6 950 aa22.21■■□□□ 1.15
SHKBP1-224ENST00000600718 TEX13AQ9BXU3 409 aaPredicted RBP22.21■■□□□ 1.15
SHKBP1-224ENST00000600718 ITGB4P16144 1822 aa22.21■■□□□ 1.15
SHKBP1-224ENST00000600718 SYTL4Q96C24 671 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-224ENST00000600718 GJD4Q96KN9 370 aaPredicted RBP22.2■■□□□ 1.14
SHKBP1-224ENST00000600718 MYL6BP14649 208 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 MEIS3Q99687 375 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 ADCY9O60503 1353 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 LAMB4A4D0S4 1761 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 GNAI3P08754 354 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 SRCIN1Q9C0H9 1055 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 C1orf115Q9H7X2 142 aa22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 TRPC5Q9UL62 973 aaPredicted RBP22.19■■□□□ 1.14
SHKBP1-224ENST00000600718 LRP10Q7Z4F1 713 aa22.18■■□□□ 1.14
SHKBP1-224ENST00000600718 BEND3Q5T5X7 828 aa22.18■■□□□ 1.14
SHKBP1-224ENST00000600718 MAP3K2Q9Y2U5 619 aa22.18■■□□□ 1.14
SHKBP1-224ENST00000600718 ATRNO75882 1429 aa22.17■■□□□ 1.14
SHKBP1-224ENST00000600718 AIMP1Q12904 312 aaKnown RBP22.17■■□□□ 1.14
SHKBP1-224ENST00000600718 RPAP2Q8IXW5 612 aaPredicted RBP22.17■■□□□ 1.14
SHKBP1-224ENST00000600718 XAGE3Q8WTP9 111 aa22.17■■□□□ 1.14
SHKBP1-224ENST00000600718 ATP10DQ9P241 1426 aa22.17■■□□□ 1.14
SHKBP1-224ENST00000600718 COPS6Q7L5N1 327 aa22.16■■□□□ 1.14
SHKBP1-224ENST00000600718 N4BP2Q86UW6 1770 aaPredicted RBP22.16■■□□□ 1.14
SHKBP1-224ENST00000600718 DOT1LQ8TEK3 1739 aa22.16■■□□□ 1.14
SHKBP1-224ENST00000600718 A0A0G2JS52 829 aa22.16■■□□□ 1.14
SHKBP1-224ENST00000600718 RBM42Q9BTD8 480 aaKnown RBP22.16■■□□□ 1.14
SHKBP1-224ENST00000600718 SMC5Q8IY18 1101 aa22.15■■□□□ 1.14
SHKBP1-224ENST00000600718 ACSBG1Q96GR2 724 aa22.15■■□□□ 1.14
SHKBP1-224ENST00000600718 ONECUT3O60422 494 aaPredicted RBP22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 ALDH1L1O75891 902 aa22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 GNAI2P04899 355 aa22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 RIC3Q7Z5B4 369 aa22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 SIRT2Q8IXJ6 389 aa22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 ANKRD44Q8N8A2 993 aa22.14■■□□□ 1.14
SHKBP1-224ENST00000600718 NBPF26B4DH59 902 aa22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 STARD3NLO95772 234 aa22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 NBPF14Q5TI25 921 aa22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 NBPF10Q6P3W6 841 aaKnown RBP22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 NBPF15Q8N660 670 aa22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 USP44Q9H0E7 712 aa22.14■■□□□ 1.13
SHKBP1-224ENST00000600718 THSD7AQ9UPZ6 1657 aa22.13■■□□□ 1.13
SHKBP1-224ENST00000600718 A1BGP04217 495 aa22.13■■□□□ 1.13
SHKBP1-224ENST00000600718 ANKRD13DQ6ZTN6 518 aa22.13■■□□□ 1.13
SHKBP1-224ENST00000600718 DNAJC10Q8IXB1 793 aa22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 PIP4K2AP48426 406 aaPredicted RBP22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 CEP85Q6P2H3 762 aa22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 LINS1Q8NG48 757 aa22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 GCC1Q96CN9 775 aa22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 QTRT2Q9H974 415 aaKnown RBP22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 PDZRN3Q9UPQ7 1066 aa22.12■■□□□ 1.13
SHKBP1-224ENST00000600718 UBTFL1P0CB47 393 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 NEXNQ0ZGT2 675 aa22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 SKAP1Q86WV1 359 aa22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 PLBD2Q8NHP8 589 aa22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 SMARCC1Q92922 1105 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 METTL22Q9BUU2 404 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 IBTKQ9P2D0 1353 aaPredicted RBP22.1■■□□□ 1.13
SHKBP1-224ENST00000600718 SLC4A9Q96Q91 983 aa22.09■■□□□ 1.13
SHKBP1-224ENST00000600718 HDAC5Q9UQL6 1122 aa22.08■■□□□ 1.13
SHKBP1-224ENST00000600718 HMMRO75330 724 aa22.08■■□□□ 1.12
SHKBP1-224ENST00000600718 CYP19A1P11511 503 aaPredicted RBP22.07■■□□□ 1.12
SHKBP1-224ENST00000600718 KCNQ2O43526 872 aa22.07■■□□□ 1.12
SHKBP1-224ENST00000600718 DCTPP1Q9H773 170 aa22.07■■□□□ 1.12
SHKBP1-224ENST00000600718 RGS3P49796 1198 aa22.06■■□□□ 1.12
SHKBP1-224ENST00000600718 NUCB1Q02818 461 aa22.06■■□□□ 1.12
SHKBP1-224ENST00000600718 SEPT12Q8IYM1 358 aa22.06■■□□□ 1.12
SHKBP1-224ENST00000600718 LRRFIP2Q9Y608 721 aaKnown RBP22.06■■□□□ 1.12
SHKBP1-224ENST00000600718 KAT6BQ8WYB5 2073 aa22.06■■□□□ 1.12
SHKBP1-224ENST00000600718 ATP8B2P98198 1209 aa22.05■■□□□ 1.12
SHKBP1-224ENST00000600718 CWF19L2Q2TBE0 894 aaKnown RBP22.05■■□□□ 1.12
SHKBP1-224ENST00000600718 C9orf78Q9NZ63 289 aaPredicted RBP22.05■■□□□ 1.12
SHKBP1-224ENST00000600718 IGKV5-2P06315 115 aa22.05■■□□□ 1.12
SHKBP1-224ENST00000600718 MYD88Q99836 296 aa22.05■■□□□ 1.12
SHKBP1-224ENST00000600718 NBPF7P0C2Y1 421 aaPredicted RBP22.04■■□□□ 1.12
SHKBP1-224ENST00000600718 RBM19Q9Y4C8 960 aaKnown RBP22.04■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms