RNA–Protein interactions for RNA: ENST00000600236.1

HIF3A-217, Transcript of hypoxia inducible factor 3 subunit alpha, humanhuman

TSL 3

Gene HIF3A, Length 313 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3A-217ENST00000600236 U2AF1L5P0DN76 240 aaPredicted RBP15.28■□□□□ 0.04
HIF3A-217ENST00000600236 U2AF1Q01081 240 aaKnown RBP eCLIP15.28■□□□□ 0.04
HIF3A-217ENST00000600236 DDR1Q08345 913 aa15.28■□□□□ 0.04
HIF3A-217ENST00000600236 ZNF790Q6PG37 636 aa15.28■□□□□ 0.04
HIF3A-217ENST00000600236 ZNF526Q8TF50 670 aaPredicted RBP15.28■□□□□ 0.04
HIF3A-217ENST00000600236 KIF13BQ9NQT8 1826 aa15.28■□□□□ 0.04
HIF3A-217ENST00000600236 MYH14Q7Z406 1995 aaKnown RBP15.27■□□□□ 0.04
HIF3A-217ENST00000600236 HEG1Q9ULI3 1381 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 CANXP27824 592 aaKnown RBP15.27■□□□□ 0.04
HIF3A-217ENST00000600236 PPP2R1AP30153 589 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 TM4SF1P30408 202 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 DALRD3Q5D0E6 543 aaKnown RBP15.27■□□□□ 0.04
HIF3A-217ENST00000600236 ARHGAP27Q6ZUM4 889 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 IL17REQ8NFR9 667 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 RTF1Q92541 710 aaKnown RBP15.27■□□□□ 0.04
HIF3A-217ENST00000600236 FMNL2Q96PY5 1086 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 RSPH6AQ9H0K4 717 aa15.27■□□□□ 0.04
HIF3A-217ENST00000600236 ZNF496Q96IT1 587 aaPredicted RBP15.26■□□□□ 0.03
HIF3A-217ENST00000600236 CEMIPQ8WUJ3 1361 aa15.25■□□□□ 0.03
HIF3A-217ENST00000600236 BTBD11A6QL63 1104 aa15.25■□□□□ 0.03
HIF3A-217ENST00000600236 NEFMP07197 916 aa15.25■□□□□ 0.03
HIF3A-217ENST00000600236 NFIXQ14938 502 aa15.25■□□□□ 0.03
HIF3A-217ENST00000600236 KCNA3P22001 575 aa15.24■□□□□ 0.03
HIF3A-217ENST00000600236 PHACTR3Q96KR7 559 aa15.24■□□□□ 0.03
HIF3A-217ENST00000600236 KIAA1551Q9HCM1 1747 aa15.23■□□□□ 0.03
HIF3A-217ENST00000600236 SERPINB2P05120 415 aa15.23■□□□□ 0.03
HIF3A-217ENST00000600236 IL6STP40189 918 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-217ENST00000600236 EIF5P55010 431 aaKnown RBP15.23■□□□□ 0.03
HIF3A-217ENST00000600236 ZNF330Q9Y3S2 320 aaPredicted RBP15.23■□□□□ 0.03
HIF3A-217ENST00000600236 N4BP2Q86UW6 1770 aaPredicted RBP15.22■□□□□ 0.03
HIF3A-217ENST00000600236 UBR2Q8IWV8 1755 aa15.22■□□□□ 0.03
HIF3A-217ENST00000600236 HTATSF1O43719 755 aaKnown RBP15.22■□□□□ 0.03
HIF3A-217ENST00000600236 CHRNA5P30532 468 aa15.22■□□□□ 0.03
HIF3A-217ENST00000600236 BICDL1Q6ZP65 573 aa15.21■□□□□ 0.03
HIF3A-217ENST00000600236 BCL2L12Q9HB09 334 aa15.21■□□□□ 0.03
HIF3A-217ENST00000600236 C9orf131Q5VYM1 1079 aa15.2■□□□□ 0.02
HIF3A-217ENST00000600236 H0YIN7 160 aa15.19■□□□□ 0.02
HIF3A-217ENST00000600236 NPHP1O15259 732 aa15.19■□□□□ 0.02
HIF3A-217ENST00000600236 SNRPA1P09661 255 aaKnown RBP15.19■□□□□ 0.02
HIF3A-217ENST00000600236 PDZRN3Q9UPQ7 1066 aa15.19■□□□□ 0.02
HIF3A-217ENST00000600236 VIRMAQ69YN4 1812 aaKnown RBP15.18■□□□□ 0.02
HIF3A-217ENST00000600236 KIF3CO14782 793 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 A1BGP04217 495 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 MCM10Q7L590 875 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 C2CD5Q86YS7 1000 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 PNNQ9H307 717 aaKnown RBP15.18■□□□□ 0.02
HIF3A-217ENST00000600236 TBC1D2BQ9UPU7 963 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 CARMIL3Q8ND23 1372 aa15.18■□□□□ 0.02
HIF3A-217ENST00000600236 KCNQ3O43525 872 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 HSPA6P17066 643 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 PDE6BP35913 854 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 TBC1D9BQ66K14 1250 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 TTLL6Q8N841 843 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 RNF181Q9P0P0 153 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 KDM2BQ8NHM5 1336 aa15.17■□□□□ 0.02
HIF3A-217ENST00000600236 TOMM70O94826 608 aa15.16■□□□□ 0.02
HIF3A-217ENST00000600236 DZIP3Q86Y13 1208 aaKnown RBP15.16■□□□□ 0.02
HIF3A-217ENST00000600236 PNISRQ8TF01 805 aaKnown RBP15.16■□□□□ 0.02
HIF3A-217ENST00000600236 SETDB2Q96T68 719 aa15.16■□□□□ 0.02
HIF3A-217ENST00000600236 ZNF652Q9Y2D9 606 aa15.16■□□□□ 0.02
HIF3A-217ENST00000600236 GOLGB1Q14789 3259 aaKnown RBP15.16■□□□□ 0.02
HIF3A-217ENST00000600236 BRCA1P38398 1863 aaKnown RBP15.16■□□□□ 0.02
HIF3A-217ENST00000600236 SIPA1L3O60292 1781 aaPredicted RBP15.16■□□□□ 0.02
HIF3A-217ENST00000600236 ST5P78524 1137 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 DCTN1Q14203 1278 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 TAF7Q15545 349 aaPredicted RBP15.15■□□□□ 0.02
HIF3A-217ENST00000600236 C16orf71Q8IYS4 520 aaPredicted RBP15.15■□□□□ 0.02
HIF3A-217ENST00000600236 CNBD1Q8NA66 436 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 BRIP1Q9BX63 1249 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 USP16Q9Y5T5 823 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 MAPK8IP3Q9UPT6 1336 aa15.15■□□□□ 0.02
HIF3A-217ENST00000600236 ZC3H4Q9UPT8 1303 aaKnown RBP15.15■□□□□ 0.02
HIF3A-217ENST00000600236 NRXN2Q9P2S2 1712 aa15.14■□□□□ 0.01
HIF3A-217ENST00000600236 CAMTA2O94983 1202 aa15.14■□□□□ 0.01
HIF3A-217ENST00000600236 PRR5LQ6MZQ0 368 aa15.14■□□□□ 0.01
HIF3A-217ENST00000600236 ARFGEF1Q9Y6D6 1849 aa15.14■□□□□ 0.01
HIF3A-217ENST00000600236 SCN7AQ01118 1682 aa15.13■□□□□ 0.01
HIF3A-217ENST00000600236 CLEC4GQ6UXB4 293 aa15.13■□□□□ 0.01
HIF3A-217ENST00000600236 ZNF622Q969S3 477 aaKnown RBP eCLIP15.13■□□□□ 0.01
HIF3A-217ENST00000600236 RGL2O15211 777 aa15.12■□□□□ 0.01
HIF3A-217ENST00000600236 LMNB1P20700 586 aa15.12■□□□□ 0.01
HIF3A-217ENST00000600236 RALBP1Q15311 655 aa15.12■□□□□ 0.01
HIF3A-217ENST00000600236 NMRK2Q9NPI5 230 aa15.12■□□□□ 0.01
HIF3A-217ENST00000600236 PRAMEF22A3QJZ6 481 aa15.11■□□□□ 0.01
HIF3A-217ENST00000600236 PIP4K2AP48426 406 aaPredicted RBP15.11■□□□□ 0.01
HIF3A-217ENST00000600236 RASSF7Q02833 373 aa15.11■□□□□ 0.01
HIF3A-217ENST00000600236 NFE2L2Q16236 605 aa15.11■□□□□ 0.01
HIF3A-217ENST00000600236 AFDNP55196 1824 aaKnown RBP15.1■□□□□ 0.01
HIF3A-217ENST00000600236 NBPF5PQ86XG9 351 aaPredicted RBP15.1■□□□□ 0.01
HIF3A-217ENST00000600236 RBM46Q8TBY0 533 aaKnown RBP15.1■□□□□ 0.01
HIF3A-217ENST00000600236 CNKSR1Q969H4 720 aa15.1■□□□□ 0.01
HIF3A-217ENST00000600236 PLEKHF1Q96S99 279 aa15.1■□□□□ 0.01
HIF3A-217ENST00000600236 APLP1P51693 650 aa15.09■□□□□ 0.01
HIF3A-217ENST00000600236 SOGA3Q5TF21 947 aa15.09■□□□□ 0.01
HIF3A-217ENST00000600236 CCDC24Q8N4L8 307 aa15.09■□□□□ 0.01
HIF3A-217ENST00000600236 STYK1Q6J9G0 422 aa15.08■□□□□ 0
HIF3A-217ENST00000600236 TPTE2Q6XPS3 522 aa15.08■□□□□ 0
HIF3A-217ENST00000600236 MASTLQ96GX5 879 aa15.08■□□□□ 0
HIF3A-217ENST00000600236 MIS18AQ9NYP9 233 aa15.08■□□□□ 0
HIF3A-217ENST00000600236 NIP7Q9Y221 180 aaKnown RBP eCLIP15.08■□□□□ 0
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms