RNA–Protein interactions for RNA: ENST00000599543.3

PNKP-213, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 3

Gene PNKP, Length 986 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-213ENST00000599543 DDR1Q08345 913 aa25.08■■□□□ 1.61
PNKP-213ENST00000599543 USPL1Q5W0Q7 1092 aa25.08■■□□□ 1.61
PNKP-213ENST00000599543 GPBP1L1Q9HC44 474 aaPredicted RBP25.08■■□□□ 1.61
PNKP-213ENST00000599543 IL17REQ8NFR9 667 aa25.07■■□□□ 1.6
PNKP-213ENST00000599543 PPP2R1AP30153 589 aa25.06■■□□□ 1.6
PNKP-213ENST00000599543 RSPH6AQ9H0K4 717 aa25.06■■□□□ 1.6
PNKP-213ENST00000599543 AFDNP55196 1824 aaKnown RBP25.06■■□□□ 1.6
PNKP-213ENST00000599543 FCHSD2O94868 740 aa25.05■■□□□ 1.6
PNKP-213ENST00000599543 STARD3NLO95772 234 aa25.05■■□□□ 1.6
PNKP-213ENST00000599543 ZNF790Q6PG37 636 aa25.05■■□□□ 1.6
PNKP-213ENST00000599543 ZNF526Q8TF50 670 aaPredicted RBP25.05■■□□□ 1.6
PNKP-213ENST00000599543 PHACTR3Q96KR7 559 aa25.05■■□□□ 1.6
PNKP-213ENST00000599543 NARFQ9UHQ1 456 aa25.05■■□□□ 1.6
PNKP-213ENST00000599543 POLRMTO00411 1230 aaKnown RBP25.04■■□□□ 1.6
PNKP-213ENST00000599543 U2AF1L5P0DN76 240 aaPredicted RBP25.04■■□□□ 1.6
PNKP-213ENST00000599543 U2AF1Q01081 240 aaKnown RBP eCLIP25.04■■□□□ 1.6
PNKP-213ENST00000599543 CEMIPQ8WUJ3 1361 aa25.04■■□□□ 1.6
PNKP-213ENST00000599543 CANXP27824 592 aaKnown RBP25.03■■□□□ 1.6
PNKP-213ENST00000599543 TM4SF1P30408 202 aa25.03■■□□□ 1.6
PNKP-213ENST00000599543 ZNF496Q96IT1 587 aaPredicted RBP25.03■■□□□ 1.6
PNKP-213ENST00000599543 HEG1Q9ULI3 1381 aa25.03■■□□□ 1.6
PNKP-213ENST00000599543 PIM2Q9P1W9 311 aa25.02■■□□□ 1.6
PNKP-213ENST00000599543 NRXN2Q9P2S2 1712 aa25.02■■□□□ 1.6
PNKP-213ENST00000599543 KCNA3P22001 575 aa25.01■■□□□ 1.59
PNKP-213ENST00000599543 ARHGAP27Q6ZUM4 889 aa25.01■■□□□ 1.59
PNKP-213ENST00000599543 TEX13AQ9BXU3 409 aaPredicted RBP25.01■■□□□ 1.59
PNKP-213ENST00000599543 FMNL2Q96PY5 1086 aa25■■□□□ 1.59
PNKP-213ENST00000599543 SCN7AQ01118 1682 aa25■■□□□ 1.59
PNKP-213ENST00000599543 CEP350Q5VT06 3117 aa24.99■■□□□ 1.59
PNKP-213ENST00000599543 NFIXQ14938 502 aa24.99■■□□□ 1.59
PNKP-213ENST00000599543 DALRD3Q5D0E6 543 aaKnown RBP24.99■■□□□ 1.59
PNKP-213ENST00000599543 A0A087WZG4 1122 aa24.98■■□□□ 1.59
PNKP-213ENST00000599543 BTBD11A6QL63 1104 aa24.98■■□□□ 1.59
PNKP-213ENST00000599543 RTF1Q92541 710 aaKnown RBP24.98■■□□□ 1.59
PNKP-213ENST00000599543 CHRNA5P30532 468 aa24.97■■□□□ 1.59
PNKP-213ENST00000599543 EIF5P55010 431 aaKnown RBP24.97■■□□□ 1.59
PNKP-213ENST00000599543 BCL2L12Q9HB09 334 aa24.97■■□□□ 1.59
PNKP-213ENST00000599543 ZNF330Q9Y3S2 320 aaPredicted RBP24.97■■□□□ 1.59
PNKP-213ENST00000599543 DLEC1Q9Y238 1755 aa24.97■■□□□ 1.59
PNKP-213ENST00000599543 SERPINB2P05120 415 aa24.94■■□□□ 1.58
PNKP-213ENST00000599543 NPM2Q86SE8 214 aaKnown RBP24.94■■□□□ 1.58
PNKP-213ENST00000599543 MCM10Q7L590 875 aa24.93■■□□□ 1.58
PNKP-213ENST00000599543 DLG5Q8TDM6 1919 aa24.92■■□□□ 1.58
PNKP-213ENST00000599543 KCNQ3O43525 872 aa24.92■■□□□ 1.58
PNKP-213ENST00000599543 IL6STP40189 918 aaPredicted RBP24.92■■□□□ 1.58
PNKP-213ENST00000599543 BICDL1Q6ZP65 573 aa24.92■■□□□ 1.58
PNKP-213ENST00000599543 BCORQ6W2J9 1755 aa24.91■■□□□ 1.58
PNKP-213ENST00000599543 SBF1O95248 1867 aa24.9■■□□□ 1.58
PNKP-213ENST00000599543 A1BGP04217 495 aa24.9■■□□□ 1.58
PNKP-213ENST00000599543 NEFMP07197 916 aa24.9■■□□□ 1.58
PNKP-213ENST00000599543 TBC1D2BQ9UPU7 963 aa24.9■■□□□ 1.58
PNKP-213ENST00000599543 HTATSF1O43719 755 aaKnown RBP24.89■■□□□ 1.58
PNKP-213ENST00000599543 C9orf131Q5VYM1 1079 aa24.89■■□□□ 1.58
PNKP-213ENST00000599543 ANKRD31Q8N7Z5 1873 aa24.88■■□□□ 1.57
PNKP-213ENST00000599543 DDX10Q13206 875 aaKnown RBP24.88■■□□□ 1.57
PNKP-213ENST00000599543 DCTN1Q14203 1278 aa24.88■■□□□ 1.57
PNKP-213ENST00000599543 TBC1D9BQ66K14 1250 aa24.88■■□□□ 1.57
PNKP-213ENST00000599543 CARMIL3Q8ND23 1372 aa24.88■■□□□ 1.57
PNKP-213ENST00000599543 KIF3CO14782 793 aa24.87■■□□□ 1.57
PNKP-213ENST00000599543 SNRPA1P09661 255 aaKnown RBP24.86■■□□□ 1.57
PNKP-213ENST00000599543 H0YIN7 160 aa24.85■■□□□ 1.57
PNKP-213ENST00000599543 C2CD5Q86YS7 1000 aa24.85■■□□□ 1.57
PNKP-213ENST00000599543 RNF181Q9P0P0 153 aa24.85■■□□□ 1.57
PNKP-213ENST00000599543 USP16Q9Y5T5 823 aa24.85■■□□□ 1.57
PNKP-213ENST00000599543 LAMB4A4D0S4 1761 aa24.85■■□□□ 1.57
PNKP-213ENST00000599543 DZIP3Q86Y13 1208 aaKnown RBP24.84■■□□□ 1.57
PNKP-213ENST00000599543 PRAMEF22A3QJZ6 481 aa24.83■■□□□ 1.57
PNKP-213ENST00000599543 CAMTA2O94983 1202 aa24.83■■□□□ 1.57
PNKP-213ENST00000599543 PIP4K2AP48426 406 aaPredicted RBP24.83■■□□□ 1.57
PNKP-213ENST00000599543 TTLL6Q8N841 843 aa24.83■■□□□ 1.57
PNKP-213ENST00000599543 SETDB2Q96T68 719 aa24.83■■□□□ 1.57
PNKP-213ENST00000599543 COL11A2P13942 1736 aaPredicted RBP24.83■■□□□ 1.57
PNKP-213ENST00000599543 NPHP1O15259 732 aa24.82■■□□□ 1.56
PNKP-213ENST00000599543 TAF7Q15545 349 aaPredicted RBP24.82■■□□□ 1.56
PNKP-213ENST00000599543 KDM3BQ7LBC6 1761 aa24.82■■□□□ 1.56
PNKP-213ENST00000599543 CCDC88AQ3V6T2 1871 aa24.81■■□□□ 1.56
PNKP-213ENST00000599543 HSPA6P17066 643 aa24.81■■□□□ 1.56
PNKP-213ENST00000599543 PDE6BP35913 854 aa24.81■■□□□ 1.56
PNKP-213ENST00000599543 PRR5LQ6MZQ0 368 aa24.81■■□□□ 1.56
PNKP-213ENST00000599543 CNBD1Q8NA66 436 aa24.8■■□□□ 1.56
PNKP-213ENST00000599543 BRIP1Q9BX63 1249 aa24.8■■□□□ 1.56
PNKP-213ENST00000599543 NMRK2Q9NPI5 230 aa24.8■■□□□ 1.56
PNKP-213ENST00000599543 PDZRN3Q9UPQ7 1066 aa24.8■■□□□ 1.56
PNKP-213ENST00000599543 CACNA1SQ13698 1873 aa24.79■■□□□ 1.56
PNKP-213ENST00000599543 TNRC6CQ9HCJ0 1690 aaKnown RBP24.79■■□□□ 1.56
PNKP-213ENST00000599543 RASSF7Q02833 373 aa24.79■■□□□ 1.56
PNKP-213ENST00000599543 PNNQ9H307 717 aaKnown RBP24.79■■□□□ 1.56
PNKP-213ENST00000599543 KDM2BQ8NHM5 1336 aa24.79■■□□□ 1.56
PNKP-213ENST00000599543 MAPK8IP3Q9UPT6 1336 aa24.79■■□□□ 1.56
PNKP-213ENST00000599543 TOMM70O94826 608 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 CCDC24Q8N4L8 307 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 PLEKHF1Q96S99 279 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 MIS18AQ9NYP9 233 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 ZNF652Q9Y2D9 606 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 TIAM2Q8IVF5 1701 aa24.78■■□□□ 1.56
PNKP-213ENST00000599543 ST5P78524 1137 aa24.77■■□□□ 1.56
PNKP-213ENST00000599543 PNISRQ8TF01 805 aaKnown RBP24.77■■□□□ 1.56
PNKP-213ENST00000599543 ZNF622Q969S3 477 aaKnown RBP eCLIP24.77■■□□□ 1.56
PNKP-213ENST00000599543 ZNF316A6NFI3 1004 aaPredicted RBP24.76■■□□□ 1.55
PNKP-213ENST00000599543 NFE2L2Q16236 605 aa24.76■■□□□ 1.55
Retrieved 100 of 20,778 RNA–protein pairs in 42.6 ms